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Information on Organism Clupea harengus

Synonyms:
Atlantic herring; Clupea harengus harengus; Clupea harengus Linnaeus, 1758; Clupea harengus;
TaxTree of Organism Clupea harengus
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Opisthokonta can be found in Brenda BRENDA pathways(clade)
Metazoa can be found in Brenda BRENDA pathways(kingdom)
Eumetazoa can be found in Brenda BRENDA pathways(clade)
Bilateria can be found in Brenda BRENDA pathways(clade)
Deuterostomia can be found in Brenda BRENDA pathways(clade)
Chordata can be found in Brenda BRENDA pathways(phylum)
Craniata can be found in Brenda (subphylum)
Vertebrata can be found in Brenda BRENDA pathways(clade)
Gnathostomata can be found in Brenda BRENDA pathways(clade)
Teleostomi can be found in Brenda (clade)
Euteleostomi can be found in Brenda BRENDA pathways(clade)
Actinopterygii can be found in Brenda BRENDA pathways(superclass)
Actinopteri can be found in Brenda (class)
Neopterygii can be found in Brenda BRENDA pathways(subclass)
Teleostei can be found in Brenda BRENDA pathways(infraclass)
Osteoglossocephalai can be found in Brenda (clade)
Clupeocephala can be found in Brenda BRENDA pathways
Otomorpha can be found in Brenda BRENDA pathways(cohort)
Clupei can be found in Brenda (subcohort)
Clupeiformes can be found in Brenda BRENDA pathways(order)
Clupeoidei can be found in Brenda (suborder)
Clupeidae can be found in Brenda BRENDA pathways(family)
Clupeinae can be found in Brenda (subfamily)
Clupea can be found in Brenda BRENDA pathways(genus)
Clupea harengus can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(R)-cysteate degradation
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PWY-6642
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-reticuline biosynthesis
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(S)-reticuline biosynthesis I
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PWY-3581
(S)-reticuline biosynthesis II
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-
PWY-6133
1,5-anhydrofructose degradation
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PWY-6992
3-(4-hydroxyphenyl)pyruvate biosynthesis
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-
PWY-5886
4-hydroxybenzoate biosynthesis I (eukaryotes)
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PWY-5754
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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allantoin degradation
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Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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Aminobenzoate degradation
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ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine and proline metabolism
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Arginine biosynthesis
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arginine metabolism
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arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
aspartate and asparagine metabolism
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atromentin biosynthesis
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PWY-7518
baicalein degradation (hydrogen peroxide detoxification)
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PWY-7214
base-degraded thiamine salvage
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PWY-6899
beta-(1,4)-mannan degradation
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PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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PWY-7586
betanidin degradation
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PWY-5461
Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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Brassinosteroid biosynthesis
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bupropion degradation
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PWY66-241
Butanoate metabolism
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Caffeine metabolism
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canavanine degradation
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PWY-31
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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-
CDP-6-deoxy-D-gulose biosynthesis
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PWY-8139
chitin biosynthesis
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PWY-6981
chitin deacetylation
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PWY-7118
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
Citrate cycle (TCA cycle)
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citric acid cycle
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coenzyme M biosynthesis
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coenzyme M biosynthesis II
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PWY-6643
creatine phosphate biosynthesis
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PWY-6158
Cysteine and methionine metabolism
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cysteine metabolism
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D-galactose degradation I (Leloir pathway)
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PWY-6317
d-mannose degradation
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degradation of hexoses
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denitrification
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diethylphosphate degradation
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PWY-5491
Drug metabolism - cytochrome P450
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dTDP-beta-L-rhamnose biosynthesis
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DTDPRHAMSYN-PWY
ethene biosynthesis III (microbes)
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PWY-6854
Fatty acid degradation
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Fe(II) oxidation
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PWY-6692
Folate biosynthesis
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Fructose and mannose metabolism
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Galactose metabolism
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GDP-alpha-D-glucose biosynthesis
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PWY-5661
GDP-mannose biosynthesis
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PWY-5659
gluconeogenesis
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gluconeogenesis I
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GLUCONEO-PWY
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glucosylglycerol biosynthesis
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PWY-7902
glutamate and glutamine metabolism
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glycerol-3-phosphate to fumarate electron transfer
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PWY0-1582
Glycerophospholipid metabolism
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glycogen biosynthesis I (from ADP-D-Glucose)
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GLYCOGENSYNTH-PWY
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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PWY-7900
glycogen degradation I
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GLYCOCAT-PWY
glycogen degradation II
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PWY-5941
glycogen metabolism
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Glycolysis / Gluconeogenesis
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Glycosaminoglycan degradation
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heterolactic fermentation
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P122-PWY
hydrogen to fumarate electron transfer
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PWY0-1576
hydroxycinnamic acid tyramine amides biosynthesis
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PWY-5474
incomplete reductive TCA cycle
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P42-PWY
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis VI (bacteria)
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TRPIAACAT-PWY
Isoquinoline alkaloid biosynthesis
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justicidin B biosynthesis
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PWY-6824
ketolysis
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PWY66-368
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-alanine degradation VI (reductive Stickland reaction)
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PWY-8188
L-arginine degradation I (arginase pathway)
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ARGASEDEG-PWY
L-arginine degradation VI (arginase 2 pathway)
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ARG-PRO-PWY
L-arginine degradation VII (arginase 3 pathway)
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ARG-GLU-PWY
L-asparagine degradation III (mammalian)
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ASPARAGINE-DEG1-PWY-1
L-aspartate biosynthesis
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ASPARTATESYN-PWY
L-aspartate degradation I
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ASPARTATE-DEG1-PWY
L-carnitine degradation II
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PWY-3641
L-citrulline biosynthesis
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CITRULBIO-PWY
L-glutamate degradation II
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GLUTDEG-PWY
L-histidine degradation V
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PWY-5031
L-lactaldehyde degradation
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-
L-malate degradation II
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PWY-7686
L-Ndelta-acetylornithine biosynthesis
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PWY-6922
L-phenylalanine biosynthesis I
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PHESYN
L-phenylalanine degradation II (anaerobic)
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ANAPHENOXI-PWY
L-phenylalanine degradation III
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PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
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PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
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TRPKYNCAT-PWY
L-tryptophan degradation VIII (to tryptophol)
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PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
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PWY-8017
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine degradation I
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TYRFUMCAT-PWY
L-tyrosine degradation II
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PWY-5151
L-tyrosine degradation III
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PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
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PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
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PWY-8016
lactate fermentation
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Linoleic acid metabolism
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luteolin triglucuronide degradation
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PWY-7445
malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methanofuran biosynthesis
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PWY-5254
methylaspartate cycle
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
NAD(P)/NADPH interconversion
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PWY-5083
NADH to cytochrome bd oxidase electron transfer I
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PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
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PWY0-1335
NADH to fumarate electron transfer
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PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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nocardicin A biosynthesis
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PWY-7797
non-pathway related
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Novobiocin biosynthesis
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O-Antigen nucleotide sugar biosynthesis
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octopamine biosynthesis
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PWY-7297
Oxidative phosphorylation
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oxidative phosphorylation
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partial TCA cycle (obligate autotrophs)
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PWY-5913
Pentose phosphate pathway
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Phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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Phenylpropanoid biosynthesis
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photosynthesis
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Propanoate metabolism
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propionate fermentation
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Purine metabolism
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putrescine biosynthesis III
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PWY-46
pyruvate fermentation to (R)-lactate
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PWY-8274
pyruvate fermentation to (S)-lactate
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PWY-5481
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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-
reactive oxygen species degradation
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DETOX1-PWY-1
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
Retinol metabolism
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rosmarinic acid biosynthesis I
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PWY-5048
salidroside biosynthesis
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PWY-6802
sesamin biosynthesis
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PWY-5469
Starch and sucrose metabolism
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starch biosynthesis
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PWY-622
starch degradation III
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PWY-6731
starch degradation V
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PWY-6737
Steroid hormone biosynthesis
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streptomycin biosynthesis
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PWY-5940
Streptomycin biosynthesis
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Styrene degradation
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succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
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PWY0-1353
succinate to cytochrome bo oxidase electron transfer
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PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
succinate to plastoquinol oxidase
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PWY1YI0-8
sucrose biosynthesis II
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PWY-7238
sucrose degradation II (sucrose synthase)
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PWY-3801
sucrose degradation IV (sucrose phosphorylase)
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PWY-5384
sulfolactate degradation III
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PWY-6638
sulfopterin metabolism
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superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
taurine biosynthesis I
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PWY-5331
taurine biosynthesis II
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PWY-7850
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
thiamine diphosphate salvage IV (yeast)
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PWY-7356
Thiamine metabolism
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trehalose degradation V
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PWY-2723
Tropane, piperidine and pyridine alkaloid biosynthesis
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Tryptophan metabolism
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Tyrosine metabolism
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tyrosine metabolism
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UDP-alpha-D-glucose biosynthesis
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-
PWY-7343
urate conversion to allantoin I
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PWY-5691
urea cycle
Valine, leucine and isoleucine degradation
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-
vancomycin resistance I
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PWY-6454
vanillin biosynthesis I
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PWY-5665
vitamin B1 metabolism
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xanthommatin biosynthesis
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PWY-8249
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
four CK isoforms: one mitochondrial MtCK and three cytosolic isoforms: muscle-type CK (cyt-MM-CK), brain-type CK (cyt-BB-CK) and muscle-brain-type CK (cyt-MB-CK). The mitochondrial s-type, rather than u-type, is predominantly expressed in herring eye
Manually annotated by BRENDA team
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homogenate
Manually annotated by BRENDA team
additional information
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thiaminase activity of undigested Baltic herring (Clupea harengus membras) found in Baltic salmon (Salmo salar) stomachs is significantly higher than that of trawl-caught Baltic herring from the same sea area, suggesting that there may be a higher risk of predation for Baltic herring with high thiaminase activity, possibly linked to their health. Thiaminase activity of the gastrointestinal contents of Baltic salmon, feeding almost entirely on Baltic herring in the Gulf of Bothnia, is significantly higher than for Baltic salmon feeding on both Baltic herring and sprat in the Gulf of Bothnia. Therefore, Baltic herring may be the major source of thiaminase for Baltic salmon. A tank experiment demonstrates that thiaminase activity in Baltic herring may vary, even within very short time periods
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
muscle-type cytosolic isozyme MM-CK, and brain-type cytosolic isozyme BB-CK
Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Clupea harengus)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA