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Information on Organism Chlorobaculum tepidum

Synonyms:
ATCC 49652; Chlorobaculum tepidum; Chlorobaculum tepidum (Wahlund et al. 1996) Imhoff 2003; Chlorobium tepidum; Chlorobium tepidum Wahlund et al. 1996; CIP 105973; DSM 12025; NBRC 103806; strain TLS; Chlorobium tepidum Wahlund et al. 1991;
Word Map for Organism Chlorobaculum tepidum
TaxTree of Organism Chlorobaculum tepidum
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
FCB group can be found in Brenda (clade)
Bacteroidetes/Chlorobi group can be found in Brenda BRENDA pathways(clade)
Chlorobi can be found in Brenda BRENDA pathways(phylum)
Chlorobia can be found in Brenda BRENDA pathways(class)
Chlorobiales can be found in Brenda (order)
Chlorobiaceae can be found in Brenda BRENDA pathways(family)
Chlorobaculum can be found in Brenda BRENDA pathways(genus)
Chlorobaculum tepidum can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(R)-cysteate degradation
-
-
PWY-6642
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-reticuline biosynthesis
-
-
(S)-reticuline biosynthesis I
-
-
PWY-3581
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
2,2'-bis-(4-hydroxy-3-methybut-2-enyl)-beta,beta-carotene monoglucoside biosynthesis
-
-
PWY-7945
2-arachidonoylglycerol biosynthesis
-
-
PWY-8052
2-nitrotoluene degradation
-
-
PWY-5641
2-oxoglutarate decarboxylation to succinyl-CoA
-
-
PWY-5084
2-oxoisovalerate decarboxylation to isobutanoyl-CoA
-
-
PWY-5046
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
-
-
CHLOROPHYLL-SYN
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
-
-
PWY-5531
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
-
-
PWY-7159
3-(4-hydroxyphenyl)pyruvate biosynthesis
-
-
PWY-5886
3-methylarginine biosynthesis
-
-
PWY-6511
4-hydroxybenzoate biosynthesis I (eukaryotes)
-
-
PWY-5754
acetate fermentation
-
-
acetyl CoA biosynthesis
-
-
acetyl-CoA biosynthesis from citrate
-
-
PWY-5172
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
aerobic toluene degradation
-
-
alanine metabolism
-
-
Alanine, aspartate and glutamate metabolism
-
-
alkane biosynthesis I
-
-
PWY-7032
alpha-carotene biosynthesis
-
-
PWY-5946
Aminoacyl-tRNA biosynthesis
-
-
Aminobenzoate degradation
-
-
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
anandamide biosynthesis I
-
-
PWY-8051
anandamide biosynthesis II
-
-
PWY-8053
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
aspartate and asparagine metabolism
-
-
assimilatory sulfate reduction I
-
-
SO4ASSIM-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
atromentin biosynthesis
-
-
PWY-7518
bacteriochlorophyll a biosynthesis
-
-
PWY-5526
bacteriochlorophyll b biosynthesis
-
-
PWY-7762
bacteriochlorophyll c biosynthesis
-
-
PWY-7759
bacteriochlorophyll d biosynthesis
-
-
PWY-7758
bacteriochlorophyll e biosynthesis
-
-
PWY-7760
bacterioruberin biosynthesis
-
-
PWY-7944
baicalein degradation (hydrogen peroxide detoxification)
-
-
PWY-7214
Benzoate degradation
-
-
beta-carotene biosynthesis
-
-
PWY-5943
Betalain biosynthesis
-
-
betanidin degradation
-
-
PWY-5461
Bifidobacterium shunt
-
-
P124-PWY
Biosynthesis of secondary metabolites
-
-
Butanoate metabolism
-
-
C4 and CAM-carbon fixation
-
-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
C5-Branched dibasic acid metabolism
-
-
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
-
-
Carotenoid biosynthesis
-
-
carotenoid biosynthesis
-
-
catechol degradation to 2-hydroxypentadienoate I
-
-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
chlorinated phenols degradation
-
-
PWY-6197
Chloroalkane and chloroalkene degradation
-
-
chlorobactene biosynthesis
-
-
PWY-7939
Chlorocyclohexane and chlorobenzene degradation
-
-
chlorophyll a biosynthesis I
-
-
PWY-5086
chlorophyll a biosynthesis II
-
-
PWY-5064
chlorophyll a biosynthesis III
-
-
PWY-7764
chlorophyll a2 biosynthesis
-
-
PWY-8126
chlorophyll b2 biosynthesis
-
-
PWY-8127
chlorophyll cycle
-
-
PWY-5068
chlorophyll metabolism
-
-
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
CMP-3-deoxy-D-manno-octulosonate biosynthesis
-
-
PWY-1269
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis
-
-
PWY-7674
CMP-KDO biosynthesis
-
-
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)
-
-
PWY-7377
coenzyme B/coenzyme M regeneration I (methanophenazine-dependent)
-
-
PWY-5207
coenzyme M biosynthesis
-
-
coenzyme M biosynthesis II
-
-
PWY-6643
cyclic electron flow
-
-
PWY-8270
Cysteine and methionine metabolism
-
-
cysteine metabolism
-
-
diacylglycerol and triacylglycerol biosynthesis
-
-
TRIGLSYN-PWY
dissimilatory sulfate reduction I (to hydrogen sufide))
-
-
DISSULFRED-PWY
Drug metabolism - cytochrome P450
-
-
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
ethene biosynthesis III (microbes)
-
-
PWY-6854
ethene biosynthesis V (engineered)
-
-
PWY-7124
Ether lipid metabolism
-
-
Fatty acid degradation
-
-
Fe(II) oxidation
-
-
PWY-6692
firefly bioluminescence
-
-
PWY-7913
flavin biosynthesis
-
-
flavin biosynthesis I (bacteria and plants)
-
-
RIBOSYN2-PWY
flavin biosynthesis II (archaea)
-
-
PWY-6167
flavin biosynthesis III (fungi)
-
-
PWY-6168
flexixanthin biosynthesis
-
-
PWY-7947
Folate biosynthesis
-
-
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
galactolipid biosynthesis I
-
-
PWY-401
gluconeogenesis
-
-
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glutamate and glutamine metabolism
-
-
glycerol degradation to butanol
-
-
PWY-7003
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
Glycerolipid metabolism
-
-
Glycerophospholipid metabolism
-
-
glycine biosynthesis II
-
-
GLYCINE-SYN2-PWY
glycine cleavage
-
-
GLYCLEAV-PWY
Glycine, serine and threonine metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
-
-
P341-PWY
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
heptadecane biosynthesis
-
-
PWY-6622
heterolactic fermentation
-
-
P122-PWY
hydrogen to fumarate electron transfer
-
-
PWY0-1576
incomplete reductive TCA cycle
-
-
P42-PWY
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis VI (bacteria)
-
-
TRPIAACAT-PWY
isoprene biosynthesis II (engineered)
-
-
PWY-7391
isoprenoid biosynthesis
-
-
isopropanol biosynthesis (engineered)
-
-
PWY-6876
Isoquinoline alkaloid biosynthesis
-
-
isorenieratene biosynthesis I (actinobacteria)
-
-
PWY-7938
isorenieratene biosynthesis II (Chlorobiaceae)
-
-
PWY-7941
justicidin B biosynthesis
-
-
PWY-6824
L-alanine degradation V (oxidative Stickland reaction)
-
-
PWY-8189
L-asparagine degradation III (mammalian)
-
-
ASPARAGINE-DEG1-PWY-1
L-aspartate biosynthesis
-
-
ASPARTATESYN-PWY
L-aspartate degradation I
-
-
ASPARTATE-DEG1-PWY
L-dopa and L-dopachrome biosynthesis
-
-
PWY-6481
L-glutamate degradation II
-
-
GLUTDEG-PWY
L-glutamate degradation VI (to pyruvate)
-
-
PWY-5087
L-glutamate degradation VII (to butanoate)
-
-
GLUDEG-II-PWY
L-phenylalanine biosynthesis I
-
-
PHESYN
L-phenylalanine biosynthesis III (cytosolic, plants)
-
-
PWY-7432
L-phenylalanine degradation II (anaerobic)
-
-
ANAPHENOXI-PWY
L-phenylalanine degradation III
-
-
PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
-
-
PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
-
-
PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
-
-
TRPKYNCAT-PWY
L-tryptophan degradation VIII (to tryptophol)
-
-
PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
-
-
PWY-8017
L-tyrosine biosynthesis I
-
-
TYRSYN
L-tyrosine degradation I
-
-
TYRFUMCAT-PWY
L-tyrosine degradation II
-
-
PWY-5151
L-tyrosine degradation III
-
-
PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
-
-
PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
-
-
PWY-8016
lactate fermentation to acetate, CO2 and hydrogen (Desulfovibrionales)
-
-
PWY-8377
linezolid resistance
-
-
PWY-6828
lipid A biosynthesis
-
-
lipid A-core biosynthesis (E. coli K-12)
-
-
LIPA-CORESYN-PWY
lipid metabolism
-
-
lipoate biosynthesis
-
-
Lipopolysaccharide biosynthesis
-
-
lutein biosynthesis
-
-
PWY-5947
luteolin triglucuronide degradation
-
-
PWY-7445
Lysine degradation
-
-
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
matairesinol biosynthesis
-
-
PWY-5466
Metabolic pathways
-
-
Methane metabolism
-
-
Methanobacterium thermoautotrophicum biosynthetic metabolism
-
-
PWY-6146
methanogenesis from CO2
-
-
methionine metabolism
-
-
methylaspartate cycle
mevalonate metabolism
-
-
mevalonate pathway I (eukaryotes and bacteria)
-
-
PWY-922
mevalonate pathway II (haloarchaea)
-
-
PWY-6174
mevalonate pathway III (Thermoplasma)
-
-
PWY-7524
mevalonate pathway IV (archaea)
-
-
PWY-8125
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
-
-
FERMENTATION-PWY
mycobactin biosynthesis
-
-
PWY185E-1
myxol-2' fucoside biosynthesis
-
-
PWY-6279
NAD metabolism
-
-
NAD(P)/NADPH interconversion
-
-
PWY-5083
NADH to cytochrome bd oxidase electron transfer I
-
-
PWY0-1334
NADH to cytochrome bd oxidase electron transfer II
-
-
PWY0-1568
NADH to cytochrome bo oxidase electron transfer I
-
-
PWY0-1335
NADH to fumarate electron transfer
-
-
PWY0-1336
NADPH to cytochrome c oxidase via plastocyanin
-
-
PWY-8271
nicotine degradation IV
-
-
PWY66-201
nitrate assimilation
-
-
nitrogen fixation I (ferredoxin)
-
-
N2FIX-PWY
Nitrogen metabolism
-
-
nitrogen remobilization from senescing leaves
-
-
PWY-6549
Nitrotoluene degradation
-
-
nocardicin A biosynthesis
-
-
PWY-7797
non-pathway related
-
-
Novobiocin biosynthesis
-
-
nucleoside and nucleotide degradation (archaea)
-
-
PWY-5532
okenone biosynthesis
-
-
PWY-7591
oxidative decarboxylation of pyruvate
-
-
Oxidative phosphorylation
-
-
oxidative phosphorylation
-
-
palmitoyl ethanolamide biosynthesis
-
-
PWY-8055
partial TCA cycle (obligate autotrophs)
-
-
PWY-5913
phenol degradation
-
-
phenol degradation I (aerobic)
-
-
PWY-5418
Phenylalanine metabolism
-
-
phenylalanine metabolism
-
-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
Phenylpropanoid biosynthesis
-
-
pheomelanin biosynthesis
-
-
PWY-7917
phosphate acquisition
-
-
PWY-6348
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7218
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
polyphosphate metabolism
-
-
PWY-8138
Porphyrin and chlorophyll metabolism
-
-
Propanoate metabolism
-
-
propionate fermentation
-
-
protective electron sinks in the thylakoid membrane (PSII to PTOX)
-
-
PWY1YI0-7
Purine metabolism
-
-
purine metabolism
-
-
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
pyruvate decarboxylation to acetyl CoA I
-
-
PYRUVDEHYD-PWY
pyruvate decarboxylation to acetyl CoA III
-
-
PWY-8275
pyruvate fermentation to acetate I
-
-
P142-PWY
pyruvate fermentation to acetate III
-
-
PWY-5483
pyruvate fermentation to acetate VI
-
-
PWY-5538
pyruvate fermentation to acetate VII
-
-
PWY-5600
pyruvate fermentation to acetone
-
-
PWY-6588
pyruvate fermentation to butanoate
-
-
CENTFERM-PWY
pyruvate fermentation to butanol I
-
-
PWY-6583
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to hexanol (engineered)
-
-
PWY-6863
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
pyruvate to cytochrome bd oxidase electron transfer
-
-
PWY-7545
reactive oxygen species degradation
-
-
DETOX1-PWY-1
reductive glycine pathway of autotrophic CO2 fixation
-
-
PWY-8303
reductive monocarboxylic acid cycle
-
-
PWY-5493
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
-
-
PWY-6857
Riboflavin metabolism
-
-
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
-
PWY-5723
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation I
-
-
PWY-4361
Selenocompound metabolism
-
-
sesamin biosynthesis
-
-
PWY-5469
Sphingolipid metabolism
-
-
sphingosine metabolism
-
-
Starch and sucrose metabolism
-
-
stigma estolide biosynthesis
-
-
PWY-6453
Styrene degradation
-
-
succinate to chytochrome c oxidase via cytochrome c6
-
-
PWY1YI0-2
succinate to cytochrome bd oxidase electron transfer
-
-
PWY0-1353
succinate to cytochrome bo oxidase electron transfer
-
-
PWY0-1329
succinate to cytochrome c oxidase via plastocyanin
-
-
PWY1YI0-3
succinate to plastoquinol oxidase
-
-
PWY1YI0-8
sulfate reduction
-
-
sulfide oxidation I (to sulfur globules)
-
-
P222-PWY
sulfide oxidation II (flavocytochrome c)
-
-
PWY-5274
sulfide oxidation III (to sulfite)
-
-
PWY-5285
sulfide oxidation IV (mitochondria)
-
-
PWY-7927
sulfite oxidation I
-
-
PWY-5276
sulfite oxidation II
-
-
PWY-5279
sulfite oxidation III
-
-
PWY-5278
sulfite oxidation V (SoeABC)
-
-
PWY-7457
sulfolactate degradation III
-
-
PWY-6638
Sulfur metabolism
-
-
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
-
-
PWY-561
superpathway of photosynthetic hydrogen production
-
-
PWY-7731
taurine biosynthesis I
-
-
PWY-5331
taurine biosynthesis II
-
-
PWY-7850
TCA cycle I (prokaryotic)
-
-
TCA
TCA cycle II (plants and fungi)
-
-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
-
-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
-
-
PWY-6969
TCA cycle VI (Helicobacter)
-
-
REDCITCYC
TCA cycle VII (acetate-producers)
-
-
PWY-7254
TCA cycle VIII (Chlamydia)
-
-
TCA-1
Terpenoid backbone biosynthesis
-
-
Thiamine metabolism
-
-
thioredoxin pathway
-
-
THIOREDOX-PWY
thiosulfate disproportionation IV (rhodanese)
-
-
PWY-5350
thiosulfate oxidation III (multienzyme complex)
-
-
PWY-5296
thiosulfate oxidation IV (multienzyme complex)
-
-
PWY-6677
Toluene degradation
-
-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
tRNA charging
-
-
TRNA-CHARGING-PWY
tRNA processing
-
-
PWY0-1479
Tropane, piperidine and pyridine alkaloid biosynthesis
-
-
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
Tyrosine metabolism
-
-
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
Valine, leucine and isoleucine degradation
-
-
vitamin B1 metabolism
-
-
vitamin B12 metabolism
-
-
vitamin K-epoxide cycle
xanthommatin biosynthesis
-
-
PWY-8249
Xylene degradation
-
-
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Chlorobaculum tepidum)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA