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Information on Organism Arabidopsis lyrata

Synonyms:
Arabidopsis lyrata (L.) O'Kane & Al-Shehbaz; Arabidopsis lyrata; lyrate rockcress; Arabidopsis_lyrata;
Word Map for Organism Arabidopsis lyrata
TaxTree of Organism Arabidopsis lyrata
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Viridiplantae can be found in Brenda BRENDA pathways(kingdom)
Streptophyta can be found in Brenda BRENDA pathways(phylum)
Streptophytina can be found in Brenda (subphylum)
Embryophyta can be found in Brenda BRENDA pathways(clade)
Tracheophyta can be found in Brenda BRENDA pathways(clade)
Euphyllophyta can be found in Brenda BRENDA pathways(clade)
Spermatophyta can be found in Brenda BRENDA pathways(clade)
Magnoliopsida can be found in Brenda BRENDA pathways(class)
Mesangiospermae can be found in Brenda (clade)
eudicotyledons can be found in Brenda BRENDA pathways(clade)
Gunneridae can be found in Brenda BRENDA pathways(clade)
Pentapetalae can be found in Brenda (clade)
rosids can be found in Brenda BRENDA pathways(clade)
malvids can be found in Brenda BRENDA pathways(clade)
Brassicales can be found in Brenda BRENDA pathways(order)
Brassicaceae can be found in Brenda BRENDA pathways(family)
Camelineae can be found in Brenda (tribe)
Arabidopsis can be found in Brenda BRENDA pathways(genus)
Arabidopsis lyrata can be found in Brenda BRENDA pathways(species)
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-propane-1,2-diol degradation
-
-
PWY-7013
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
1,5-anhydrofructose degradation
-
-
PWY-6992
3-methylbutanol biosynthesis (engineered)
-
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PWY-6871
acetaldehyde biosynthesis I
-
-
PWY-6333
acetone degradation I (to methylglyoxal)
-
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PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
acetylene degradation (anaerobic)
-
-
P161-PWY
aliphatic glucosinolate biosynthesis, side chain elongation cycle
-
-
PWYQT-4450
alpha-Linolenic acid metabolism
-
-
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
Amino sugar and nucleotide sugar metabolism
-
-
Aminobenzoate degradation
-
-
Arachidonic acid metabolism
-
-
arachidonic acid metabolism
-
-
aromatic glucosinolate activation
-
-
PWY-6684
aromatic polyketides biosynthesis
-
-
PWY-6316
Ascorbate and aldarate metabolism
-
-
bacterial bioluminescence
-
-
PWY-7723
beta-caryophyllene biosynthesis
-
-
PWY-6275
beta-D-glucuronide and D-glucuronate degradation
-
-
PWY-7247
Bifidobacterium shunt
-
-
P124-PWY
Biosynthesis of secondary metabolites
-
-
Brassinosteroid biosynthesis
-
-
bupropion degradation
-
-
PWY66-241
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
Caffeine metabolism
-
-
cellulose biosynthesis
-
-
PWY-1001
chitin biosynthesis
-
-
PWY-6981
Chloroalkane and chloroalkene degradation
-
-
D-sorbitol biosynthesis I
-
-
PWY-5054
degradation of sugar acids
-
-
Drug metabolism - cytochrome P450
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-
Drug metabolism - other enzymes
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-
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol fermentation
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-
ethanolamine utilization
-
-
PWY0-1477
Fatty acid degradation
-
-
Flavone and flavonol biosynthesis
-
-
flavonoid biosynthesis
-
-
PWY1F-FLAVSYN
Flavonoid biosynthesis
-
-
flavonoid biosynthesis (in equisetum)
-
-
PWY-6787
flavonoid di-C-glucosylation
-
-
PWY-7897
formaldehyde oxidation I
-
-
RUMP-PWY
GDP-mannose biosynthesis
-
-
PWY-5659
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glucosinolate activation
-
-
PWY-5267
Glucosinolate biosynthesis
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-
Glycine, serine and threonine metabolism
-
-
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis III (from glucose)
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-
ANAGLYCOLYSIS-PWY
glycolysis V (Pyrococcus)
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P341-PWY
Glycosaminoglycan degradation
-
-
heterolactic fermentation
-
-
P122-PWY
indole glucosinolate activation (herbivore attack)
-
-
PWYQT-4476
indole glucosinolate activation (intact plant cell)
-
-
PWYQT-4477
indole-3-acetate biosynthesis II
-
-
PWY-581
L-homomethionine biosynthesis
-
-
PWY-1186
L-isoleucine degradation II
-
-
PWY-5078
L-leucine degradation III
-
-
PWY-5076
L-methionine degradation III
-
-
PWY-5082
L-phenylalanine degradation III
-
-
PWY-5079
L-tryptophan degradation V (side chain pathway)
-
-
PWY-3162
L-tyrosine degradation III
-
-
PWY3O-4108
L-valine degradation II
-
-
PWY-5057
leucine metabolism
-
-
leucodelphinidin biosynthesis
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-
PWY-5152
leucopelargonidin and leucocyanidin biosynthesis
-
-
PWY1F-823
Linoleic acid metabolism
-
-
luteolin triglucuronide degradation
-
-
PWY-7445
Lysine degradation
-
-
melatonin degradation I
-
-
PWY-6398
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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-
methionine metabolism
-
-
methylglyoxal degradation
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-
methylglyoxal degradation I
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PWY-5386
methylglyoxal degradation VIII
-
-
PWY-5386-1
methylsalicylate biosynthesis
-
-
PWY18C3-22
Microbial metabolism in diverse environments
-
-
mixed acid fermentation
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-
FERMENTATION-PWY
Naphthalene degradation
-
-
naringenin biosynthesis (engineered)
-
-
PWY-7397
nicotine degradation IV
-
-
PWY66-201
nicotine degradation V
-
-
PWY66-221
nocardicin A biosynthesis
-
-
PWY-7797
noradrenaline and adrenaline degradation
-
-
PWY-6342
oleoresin sesquiterpene volatiles biosynthesis
-
-
PWY-5425
Pentose and glucuronate interconversions
-
-
Pentose phosphate pathway
-
-
phenylalanine metabolism
-
-
phenylethanol biosynthesis
-
-
PWY-5751
phloridzin biosynthesis
-
-
PWY-6515
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
phytol degradation
-
-
PWY66-389
pinobanksin biosynthesis
-
-
PWY-5059
Porphyrin and chlorophyll metabolism
-
-
propanol degradation
-
-
protective electron sinks in the thylakoid membrane (PSII to PTOX)
-
-
PWY1YI0-7
protein ubiquitination
-
-
PWY-7511
pyruvate fermentation to ethanol I
-
-
PWY-5480
pyruvate fermentation to ethanol II
-
-
PWY-5486
pyruvate fermentation to ethanol III
-
-
PWY-6587
pyruvate fermentation to isobutanol (engineered)
-
-
PWY-7111
Pyruvate metabolism
-
-
Retinol metabolism
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-
rutin degradation
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-
PWY-6848
salidroside biosynthesis
-
-
PWY-6802
serotonin degradation
-
-
PWY-6313
serotonin metabolism
-
-
Sesquiterpenoid and triterpenoid biosynthesis
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-
Starch and sucrose metabolism
-
-
starch biosynthesis
-
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PWY-622
Steroid hormone biosynthesis
-
-
sucrose biosynthesis I (from photosynthesis)
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-
SUCSYN-PWY
sucrose biosynthesis II
-
-
PWY-7238
sucrose biosynthesis III
-
-
PWY-7347
sucrose degradation II (sucrose synthase)
-
-
PWY-3801
sucrose degradation III (sucrose invertase)
-
-
PWY-621
sucrose degradation IV (sucrose phosphorylase)
-
-
PWY-5384
superpathway of fermentation (Chlamydomonas reinhardtii)
-
-
PWY4LZ-257
Tryptophan metabolism
-
-
Tyrosine metabolism
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-
tyrosine metabolism
-
-
UDP-N-acetyl-D-galactosamine biosynthesis II
-
-
PWY-5514
UDP-N-acetyl-D-galactosamine biosynthesis III
-
-
PWY-8013
UDP-N-acetyl-D-glucosamine biosynthesis I
-
-
UDPNAGSYN-PWY
UDP-N-acetyl-D-glucosamine biosynthesis II
-
-
UDPNACETYLGALSYN-PWY
valine metabolism
-
-
vanillin biosynthesis I
-
-
PWY-5665
volatile benzenoid biosynthesis I (ester formation)
-
-
PWY-4203
xanthohumol biosynthesis
-
-
PWY-5135
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
AlBSMT1 transcript levels are, similarly to AtBSMT1 transcripts in Arabidopsis thaliana higher in flowers
Manually annotated by BRENDA team
detectable AlBSMT1 transcript levels
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Arabidopsis lyrata)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA