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Information on Organism Amycolatopsis mediterranei

Synonyms:
Amycolatopsis mediterranei (Margalith and Beretta 1960) Lechevalier et al. 1986; Amycolatopsis mediterranei (Margalith and Beretta 1960) Lechevalier et al. 1986 emend. Nouioui et al. 2018; Amycolatopsis mediterranei; ATCC 13685; CCUG 43144; CIP 107074; culture-collection:NRRL:B:3240; DSM 43304; IFO 13415; IMSNU 20056; ISP 5501; JCM 4789; NBRC 13415; Nocardia mediterranei (Margalith and Beretta 1960) Thiemann et al. 1969 (Approved Lists 1980); Nocardia mediterranei; NRRL B-3240; "Streptomyces mediterranei" Margalith and Beretta 1960; Streptomyces mediterranei; VKM Ac-798; Amycolatopsis mediterranea;
Word Map for Organism Amycolatopsis mediterranei
TaxTree of Organism Amycolatopsis mediterranei
Condensed Tree View
cellular organisms (cellular root)
Bacteria can be found in Brenda BRENDA pathways(domain)
Bacillati can be found in Brenda (kingdom)
Actinomycetota can be found in Brenda BRENDA pathways(phylum)
Actinomycetes can be found in Brenda (class)
Pseudonocardiales can be found in Brenda BRENDA pathways(order)
Pseudonocardiaceae can be found in Brenda BRENDA pathways(family)
Amycolatopsis can be found in Brenda BRENDA pathways(genus)
Amycolatopsis mediterranei can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(5Z)-dodecenoate biosynthesis I
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-
PWY0-862
(5Z)-dodecenoate biosynthesis II
-
-
PWY-7858
(aminomethyl)phosphonate degradation
-
-
PWY-7805
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
1,5-anhydrofructose degradation
-
-
PWY-6992
2'-deoxymugineic acid phytosiderophore biosynthesis
-
-
PWY-5912
2-nitrotoluene degradation
-
-
PWY-5641
3-amino-5-hydroxybenzoate biosynthesis
-
-
PWY-5979
3-dehydroquinate biosynthesis I
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-
PWY-6164
3-dehydroquinate biosynthesis II (archaea)
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PWY-6160
3-hydroxypropanoate cycle
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-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
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-
PWY-5789
3-phenylpropionate degradation
-
-
4-hydroxy-2(1H)-quinolone biosynthesis
-
-
PWY-6661
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
8-amino-7-oxononanoate biosynthesis I
-
-
PWY-6519
8-amino-7-oxononanoate biosynthesis IV
-
-
PWY-8203
acetate fermentation
-
-
acetone degradation I (to methylglyoxal)
-
-
PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
acridone alkaloid biosynthesis
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-
PWY-5958
acyl carrier protein activation
-
-
PWY-6012-1
acyl carrier protein metabolism
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-
PWY-6012
acyl-CoA hydrolysis
-
-
PWY-5148
adenosine nucleotides degradation I
-
-
PWY-6596
adenosine nucleotides degradation II
-
-
SALVADEHYPOX-PWY
aerobic toluene degradation
-
-
Alanine, aspartate and glutamate metabolism
-
-
Amaryllidacea alkaloids biosynthesis
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-
PWY-7826
Amino sugar and nucleotide sugar metabolism
-
-
Aminoacyl-tRNA biosynthesis
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-
Aminobenzoate degradation
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-
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
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-
PWY-6964
ammonia assimilation cycle III
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-
AMMASSIM-PWY
ammonia oxidation II (anaerobic)
-
-
P303-PWY
anaerobic energy metabolism (invertebrates, mitochondrial)
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-
PWY-7384
ansamitocin P biosynthesis
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-
PWY-8344
ansatrienin biosynthesis
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-
PWY-8040
anteiso-branched-chain fatty acid biosynthesis
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-
PWY-8173
arachidonate biosynthesis
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-
Arachidonic acid metabolism
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-
arachidonic acid metabolism
-
-
Arginine biosynthesis
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-
arginine metabolism
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-
bacilysin biosynthesis
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-
PWY-7626
bacterial bioluminescence
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-
PWY-7723
Benzoate degradation
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-
beta-Alanine metabolism
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-
Bifidobacterium shunt
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-
P124-PWY
Biosynthesis of 12-, 14- and 16-membered macrolides
-
-
Biosynthesis of ansamycins
-
-
Biosynthesis of secondary metabolites
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-
Biosynthesis of siderophore group nonribosomal peptides
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-
Biosynthesis of unsaturated fatty acids
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-
Biosynthesis of vancomycin group antibiotics
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-
Biosynthesis of various secondary metabolites - part 2
-
-
Biotin metabolism
-
-
bupropion degradation
-
-
PWY66-241
Caffeine metabolism
-
-
Calvin-Benson-Bassham cycle
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-
CALVIN-PWY
camalexin biosynthesis
-
-
CAMALEXIN-SYN
Carbon fixation in photosynthetic organisms
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-
Carbon fixation pathways in prokaryotes
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-
catechol degradation to 2-hydroxypentadienoate I
-
-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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-
PWY-5419
chaxamycin biosynthesis
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-
PWY-8036
Chlorocyclohexane and chlorobenzene degradation
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-
chlorophyll a degradation I
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-
PWY-5098
chlorophyll a degradation II
-
-
PWY-6927
chlorophyll a degradation III
-
-
PWY-7164
chlorophyll metabolism
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-
chorismate metabolism
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-
cis-vaccenate biosynthesis
CO2 fixation in Crenarchaeota
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-
conversion of succinate to propanoate
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-
PWY0-43
cremeomycin biosynthesis
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-
PWY-8296
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
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-
PWY-7854
cutin biosynthesis
-
-
PWY-321
Cysteine and methionine metabolism
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-
cysteine metabolism
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-
d-mannose degradation
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-
denitrification
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-
dipicolinate biosynthesis
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-
PWY-8088
Drug metabolism - cytochrome P450
-
-
Drug metabolism - other enzymes
-
-
dZTP biosynthesis
-
-
PWY-8289
ectoine biosynthesis
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-
P101-PWY
enterobactin biosynthesis
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-
ENTBACSYN-PWY
erythromycin D biosynthesis
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-
PWY-7106
Ether lipid metabolism
-
-
even iso-branched-chain fatty acid biosynthesis
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-
PWY-8175
Fatty acid biosynthesis
-
-
Fatty acid degradation
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-
Fatty acid elongation
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-
fatty acid elongation -- saturated
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-
FASYN-ELONG-PWY
firefly bioluminescence
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PWY-7913
formaldehyde assimilation II (assimilatory RuMP Cycle)
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-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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-
P185-PWY
Galactose metabolism
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-
gliotoxin biosynthesis
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PWY-7533
glutamate and glutamine metabolism
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-
Glutathione metabolism
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-
glutathione metabolism
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-
glutathione-mediated detoxification
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-
glutathione-mediated detoxification I
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-
PWY-4061
glutathione-mediated detoxification II
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-
PWY-6842
Glycerolipid metabolism
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-
Glycine, serine and threonine metabolism
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-
glycogen metabolism
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-
Glyoxylate and dicarboxylate metabolism
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-
glyphosate degradation III
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PWY-7807
gondoate biosynthesis (anaerobic)
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-
PWY-7663
grixazone biosynthesis
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-
PWY-7153
guanosine nucleotides degradation I
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-
PWY-6607
guanosine nucleotides degradation II
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-
PWY-6606
guanosine nucleotides degradation III
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PWY-6608
homocysteine and cysteine interconversion
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-
PWY-801
hydrogen sulfide biosynthesis II (mammalian)
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-
PWY66-426
indole glucosinolate activation (intact plant cell)
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-
PWYQT-4477
inosine 5'-phosphate degradation
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-
PWY-5695
jasmonic acid biosynthesis
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-
PWY-735
kanosamine biosynthesis II
L-aspartate degradation II (aerobic)
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-
PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-cysteine biosynthesis III (from L-homocysteine)
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-
HOMOCYSDEGR-PWY
L-glutamine biosynthesis I
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-
GLNSYN-PWY
L-glutamine degradation II
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GLUTAMINEFUM-PWY
L-homoserine biosynthesis
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-
HOMOSERSYN-PWY
L-lysine biosynthesis I
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-
DAPLYSINESYN-PWY
L-lysine biosynthesis II
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-
PWY-2941
L-lysine biosynthesis III
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-
PWY-2942
L-lysine biosynthesis VI
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PWY-5097
L-methionine biosynthesis IV
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-
PWY-7977
L-nicotianamine biosynthesis
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-
PWY-5957
L-phenylalanine biosynthesis I
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-
PHESYN
L-phenylalanine biosynthesis II
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-
PWY-3462
L-phenylalanine biosynthesis III (cytosolic, plants)
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PWY-7432
L-tryptophan biosynthesis
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TRPSYN-PWY
L-tyrosine biosynthesis I
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-
TYRSYN
L-tyrosine biosynthesis II
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-
PWY-3461
L-tyrosine biosynthesis III
-
-
PWY-6120
Linoleic acid metabolism
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-
lipid A biosynthesis
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-
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
lipid metabolism
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-
Lysine biosynthesis
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-
macrolide antibiotic biosynthesis
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-
melatonin degradation I
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-
PWY-6398
Metabolic pathways
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-
Metabolism of xenobiotics by cytochrome P450
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-
methionine metabolism
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-
methylaspartate cycle
Microbial metabolism in diverse environments
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mitomycin biosynthesis
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PWY-8039
Monobactam biosynthesis
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-
mycolate biosynthesis
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PWYG-321
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
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-
PWY-6397
mycothiol biosynthesis
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PWY1G-0
NAD metabolism
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-
NAD salvage (plants)
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PWY-5381
NAD salvage pathway III (to nicotinamide riboside)
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NAD-BIOSYNTHESIS-II
NADPH to cytochrome c oxidase via plastocyanin
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-
PWY-8271
naphthomycin biosynthesis
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PWY-8038
Nicotinate and nicotinamide metabolism
-
-
nicotine degradation IV
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-
PWY66-201
nicotine degradation V
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-
PWY66-221
nitrate reduction I (denitrification)
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-
DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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-
PWY-381
nitrate reduction VII (denitrification)
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-
PWY-6748
nitrifier denitrification
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-
PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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-
Nitrotoluene degradation
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-
norspermidine biosynthesis
-
-
PWY-6562
O-antigen building blocks biosynthesis (E. coli)
-
-
OANTIGEN-PWY
O-Antigen nucleotide sugar biosynthesis
-
-
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
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-
PWY-7388
odd iso-branched-chain fatty acid biosynthesis
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PWY-8174
oleate biosynthesis II (animals and fungi)
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-
PWY-5996
oleate biosynthesis IV (anaerobic)
-
-
PWY-7664
Other glycan degradation
-
-
Oxidative phosphorylation
-
-
palmitate biosynthesis
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-
palmitate biosynthesis II (type II fatty acid synthase)
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-
PWY-5971
palmitate biosynthesis III
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-
PWY-8279
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
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-
PWY-6282
palmitoleate biosynthesis IV (fungi and animals)
-
-
PWY3O-1801
Pantothenate and CoA biosynthesis
-
-
pantothenate biosynthesis
-
-
pentachlorophenol degradation
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-
PCPDEG-PWY
Pentose phosphate pathway
-
-
pentose phosphate pathway
-
-
pentose phosphate pathway (non-oxidative branch) I
-
-
NONOXIPENT-PWY
pentose phosphate pathway (non-oxidative branch) II
-
-
PWY-8178
pentose phosphate pathway (partial)
-
-
P21-PWY
Peptidoglycan biosynthesis
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-
peptidoglycan biosynthesis V (beta-lactam resistance)
-
-
PWY-6470
petrobactin biosynthesis
-
-
PWY-6289
petroselinate biosynthesis
-
-
PWY-5367
Phenazine biosynthesis
-
-
phenol degradation
-
-
phenolphthiocerol biosynthesis
-
-
PWY-7742
phenylalanine metabolism
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-
Phenylalanine, tyrosine and tryptophan biosynthesis
-
-
phosphopantothenate biosynthesis I
-
-
PANTO-PWY
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
plasmalogen biosynthesis I (aerobic)
-
-
PWY-7782
platensimycin biosynthesis
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-
PWY-8179
Porphyrin and chlorophyll metabolism
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-
Propanoate metabolism
-
-
propanoyl CoA degradation I
-
-
PROPIONMET-PWY
propionate fermentation
-
-
Purine metabolism
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-
purine metabolism
-
-
pyrimidine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7184
pyrimidine deoxyribonucleotides de novo biosynthesis II
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-
PWY-7187
pyrimidine deoxyribonucleotides de novo biosynthesis III
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-
PWY-6545
pyrimidine deoxyribonucleotides dephosphorylation
-
-
PWY-7206
Pyrimidine metabolism
-
-
pyrrolnitrin biosynthesis
-
-
PWY-6831
pyruvate fermentation to propanoate I
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-
P108-PWY
rebeccamycin biosynthesis
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-
PWY-6324
retinol biosynthesis
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-
PWY-6857
Retinol metabolism
-
-
Riboflavin metabolism
-
-
rifamycin B biosynthesis
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-
PWY-5984
Rubisco shunt
-
-
PWY-5723
saframycin A biosynthesis
-
-
PWY-7671
salinosporamide A biosynthesis
-
-
PWY-6627
spermidine biosynthesis II
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-
PWY-6559
Sphingolipid metabolism
-
-
sporopollenin precursors biosynthesis
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-
PWY-6733
Starch and sucrose metabolism
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-
starch degradation
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-
Staurosporine biosynthesis
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-
stearate biosynthesis I (animals)
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-
PWY-5972
stearate biosynthesis II (bacteria and plants)
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-
PWY-5989
stearate biosynthesis III (fungi)
-
-
PWY3O-355
stearate biosynthesis IV
-
-
PWY-8280
Steroid hormone biosynthesis
-
-
streptomycin biosynthesis
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PWY-5940
Streptomycin biosynthesis
-
-
streptorubin B biosynthesis
-
-
PWY1A0-6120
streptovaricin biosynthesis
-
-
PWY-8035
Styrene degradation
-
-
suberin monomers biosynthesis
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-
PWY-1121
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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-
PWY0-166
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
-
-
PWY-7328
taurine biosynthesis III
-
-
PWY-8359
tetradecanoate biosynthesis (mitochondria)
-
-
PWY66-430
threonine metabolism
-
-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
-
-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
-
-
TOLUENE-DEG-2-OH-PWY
triacylglycerol degradation
-
-
LIPAS-PWY
tRNA charging
-
-
TRNA-CHARGING-PWY
tRNA processing
-
-
PWY0-1479
Tryptophan metabolism
-
-
tryptophan metabolism
-
-
tunicamycin biosynthesis
-
-
PWY-7821
UDP-alpha-D-galactofuranose biosynthesis
-
-
PWY-7622
UTP and CTP dephosphorylation I
-
-
PWY-7185
Valine, leucine and isoleucine degradation
-
-
vanillin biosynthesis I
-
-
PWY-5665
Xylene degradation
-
-
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Amycolatopsis mediterranei)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA