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Organism related
Word Map for Organism Brachypodium distachyon
- Brachypodium distachyon
- barley
- aestivum
- cereal
- sorghum
- triticum
- hybridum
- aegilops
- stacei
- tauschii
- triticeae
- sylvaticum
- pooideae
- hordeum
- brassinosteroids
- striiformis
-
homoeologous
-
vernalization
-
spikelet
-
exon-intron
- monolignols
-
cis-elements
TaxTree of Organism Brachypodium distachyon
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EC NUMBER 
COMMENTARY 
-
preliminary BRENDA-supplied EC number
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
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PWY-6717
(S)-propane-1,2-diol degradation
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PWY-7013
(S)-reticuline biosynthesis I
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PWY-3581
(S)-reticuline biosynthesis II
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PWY-6133
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1,5-anhydrofructose degradation
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PWY-6992
1-methylpyrrolinium biosynthesis
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PWY-5315
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)
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PWY-4661
1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)
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PWY-6372
2-arachidonoylglycerol biosynthesis
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PWY-8052
24-epi-campesterol, fucosterol, and clionasterol biosynthesis (diatoms)
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PWY-8238
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
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CHLOROPHYLL-SYN
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
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PWY-5531
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
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PWY-7159
3-(4-hydroxyphenyl)pyruvate biosynthesis
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PWY-5886
3-methylbutanol biosynthesis (engineered)
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PWY-6871
4-hydroxy-2-nonenal detoxification
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PWY-7112
4-hydroxybenzoate biosynthesis I (eukaryotes)
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PWY-5754
5-deoxystrigol biosynthesis
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PWY-7101
abscisic acid biosynthesis
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PWY-695
acetaldehyde biosynthesis I
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PWY-6333
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetylene degradation (anaerobic)
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P161-PWY
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
all-trans-farnesol biosynthesis
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PWY-6859
alpha-amyrin biosynthesis
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PWY-5377
alpha-linolenate metabolites biosynthesis
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PWY-8398
Amaryllidacea alkaloids biosynthesis
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PWY-7826
ammonia oxidation II (anaerobic)
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P303-PWY
amygdalin and prunasin degradation
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PWY-6011
arsenate detoxification I
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PWY-8264
ascorbate glutathione cycle
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PWY-2261
ascorbate recycling (cytosolic)
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PWY-6370
assimilatory sulfate reduction I
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SO4ASSIM-PWY
assimilatory sulfate reduction III
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PWY-6683
atromentin biosynthesis
-
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PWY-7518
avenanthramide biosynthesis
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PWY-8157
bacterial bioluminescence
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PWY-7723
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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PWY-6444
beta-(1,4)-mannan degradation
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PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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PWY-7586
beta-alanine biosynthesis I
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PWY-3981
Bifidobacterium shunt
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P124-PWY
bile acid biosynthesis, neutral pathway
bisabolene biosynthesis (engineered)
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PWY-7102
botryococcenes and methylated squalene biosynthesis
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PWY-6105
brassinolide biosynthesis I
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PWY-699
brassinolide biosynthesis II
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PWY-2582
bupropion degradation
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PWY66-241
butanol and isobutanol biosynthesis (engineered)
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PWY-7396
C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Calvin-Benson-Bassham cycle
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CALVIN-PWY
camalexin biosynthesis
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CAMALEXIN-SYN
capsiconiate biosynthesis
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PWY-6027
cellulose biosynthesis
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PWY-1001
cellulose degradation II (fungi)
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PWY-6788
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
cholesterol biosynthesis (algae, late side-chain reductase)
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PWY-8191
cholesterol biosynthesis (diatoms)
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PWY-8239
cholesterol biosynthesis (plants, early side-chain reductase)
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PWY18C3-1
cholesterol biosynthesis II (via 24,25-dihydrolanosterol)
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PWY66-3
cholesterol degradation to androstenedione I (cholesterol oxidase)
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PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
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PWY-6946
chorismate biosynthesis from 3-dehydroquinate
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PWY-6163
cinnamoyl-CoA biosynthesis
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PWY-6457
CO2 fixation into oxaloacetate (anaplerotic)
-
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PWYQT-4429
cytochrome c biogenesis (system I type)
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PWY-8147
cytokinin-O-glucosides biosynthesis
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PWY-2902
di-myo-inositol phosphate biosynthesis
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PWY-6664
diacylglycerol and triacylglycerol biosynthesis
-
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TRIGLSYN-PWY
DIMBOA-glucoside biosynthesis
-
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PWY-6950
dissimilatory sulfate reduction I (to hydrogen sufide))
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DISSULFRED-PWY
divinyl ether biosynthesis II
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PWY-5409
dTDP-4-O-demethyl-beta-L-noviose biosynthesis
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PWY-7301
dTDP-beta-L-rhamnose biosynthesis
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DTDPRHAMSYN-PWY
dTDP-L-daunosamine biosynthesis
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PWY-7814
dTDP-sibirosamine biosynthesis
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PWY-8380
dTMP de novo biosynthesis (mitochondrial)
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PWY66-385
ephedrine biosynthesis
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PWY-5883
ergosterol biosynthesis II
-
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PWY-7154
Escherichia coli serotype O:127 O antigen biosynthesis
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PWY-8231
Escherichia coli serotype O:86 O antigen biosynthesis
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PWY-7290
ethanol degradation I
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ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
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PWY66-21
ethanol degradation IV
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PWY66-162
ethanolamine utilization
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PWY0-1477
ethene biosynthesis I (plants)
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ETHYL-PWY
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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PWY-7124
ferulate and sinapate biosynthesis
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PWY-5168
folate transformations II (plants)
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PWY-3841
folate transformations III (E. coli)
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1CMET2-PWY
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
free phenylpropanoid acid biosynthesis
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PWY-2181
fructan degradation
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PWY-862
GDP-mannose biosynthesis
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PWY-5659
gibberellin biosynthesis III (early C-13 hydroxylation)
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PWY-5035
gibberellin inactivation I (2beta-hydroxylation)
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PWY-102
ginsenosides biosynthesis
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PWY-5672
gliotoxin biosynthesis
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PWY-7533
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glucosylglycerol biosynthesis
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PWY-7902
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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PWY-6842
glutathione-peroxide redox reactions
-
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PWY-4081
glycogen biosynthesis I (from ADP-D-Glucose)
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GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
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PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
-
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PWY-7900
glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
gossypol biosynthesis
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PWY-5773
heterolactic fermentation
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P122-PWY
histamine degradation
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PWY-6181
hydroxycinnamic acid tyramine amides biosynthesis
-
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PWY-5474
indole glucosinolate activation (intact plant cell)
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PWYQT-4477
indole-3-acetate biosynthesis II
-
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PWY-581
indole-3-acetate biosynthesis VI (bacteria)
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TRPIAACAT-PWY
jasmonic acid biosynthesis
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PWY-735
justicidin B biosynthesis
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PWY-6824
L-ascorbate degradation II (bacterial, aerobic)
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PWY-6961
L-ascorbate degradation III
-
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PWY-6960
L-isoleucine degradation II
-
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PWY-5078
L-leucine degradation III
-
-
PWY-5076
L-methionine degradation III
-
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PWY-5082
L-methionine salvage cycle II (plants)
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PWY-7270
L-phenylalanine biosynthesis I
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-
PHESYN
L-phenylalanine degradation II (anaerobic)
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ANAPHENOXI-PWY
L-phenylalanine degradation III
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PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
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PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
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TRPKYNCAT-PWY
L-tryptophan degradation V (side chain pathway)
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PWY-3162
L-tryptophan degradation VIII (to tryptophol)
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PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
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PWY-8017
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine degradation I
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-
TYRFUMCAT-PWY
L-tyrosine degradation II
-
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PWY-5151
L-tyrosine degradation III
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-
PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
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PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
-
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PWY-8016
L-valine degradation II
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PWY-5057
lanosterol biosynthesis
-
-
PWY-6132
linoleate metabolites biosynthesis
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PWY-8395
lipid A-core biosynthesis (E. coli K-12)
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LIPA-CORESYN-PWY
lychnose and isolychnose biosynthesis
-
-
PWY-6524
mangrove triterpenoid biosynthesis
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-
PWY-6109
matairesinol biosynthesis
-
-
PWY-5466
melatonin degradation I
-
-
PWY-6398
Methanobacterium thermoautotrophicum biosynthetic metabolism
-
-
PWY-6146
methanofuran biosynthesis
-
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PWY-5254
methanol oxidation to formaldehyde IV
-
-
PWY-5506
methyl indole-3-acetate interconversion
-
-
PWY-6303
methyl phomopsenoate biosynthesis
-
-
PWY-7721
methylsalicylate degradation
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PWY18C3-24
mixed acid fermentation
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FERMENTATION-PWY
mucin core 1 and core 2 O-glycosylation
-
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PWY-7433
mucin core 3 and core 4 O-glycosylation
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PWY-7435
mycothiol biosynthesis
-
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PWY1G-0
myo-inositol biosynthesis
nicotine degradation IV
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PWY66-201
nicotine degradation V
-
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PWY66-221
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
nitrogen remobilization from senescing leaves
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PWY-6549
nocardicin A biosynthesis
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PWY-7797
noradrenaline and adrenaline degradation
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PWY-6342
nucleoside and nucleotide degradation (archaea)
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PWY-5532
octopamine biosynthesis
-
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PWY-7297
oleandomycin activation/inactivation
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PWY-6972
partial TCA cycle (obligate autotrophs)
-
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PWY-5913
pectin degradation I
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PWY-7246
pectin degradation II
-
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PWY-7248
pentachlorophenol degradation
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-
PCPDEG-PWY
pentacyclic triterpene biosynthesis
-
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PWY-7251
pentose phosphate pathway (non-oxidative branch) I
-
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NONOXIPENT-PWY
pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
pentose phosphate pathway (partial)
-
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P21-PWY
periplasmic disulfide bond formation
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PWY0-1599
phenolic malonylglucosides biosynthesis
-
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PWY-6930
phenylethanol biosynthesis
-
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PWY-5751
phenylpropanoid biosynthesis
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PWY-361
phenylpropanoid biosynthesis, initial reactions
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PWY1F-467
phenylpropanoids methylation (ice plant)
-
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PWY-7498
phosphatidylinositol biosynthesis I (bacteria)
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PWY-6580
phospholipases
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LIPASYN-PWY
phytol degradation
-
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PWY66-389
phytosterol biosynthesis (plants)
-
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PWY-2541
plasmalogen biosynthesis I (aerobic)
-
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PWY-7782
plasmalogen degradation
-
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PWY-7783
procollagen hydroxylation and glycosylation
-
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PWY-7894
protein ubiquitination
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PWY-7511
pyruvate fermentation to ethanol I
-
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PWY-5480
pyruvate fermentation to ethanol II
-
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PWY-5486
pyruvate fermentation to ethanol III
-
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PWY-6587
pyruvate fermentation to isobutanol (engineered)
-
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PWY-7111
reactive oxygen species degradation
-
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DETOX1-PWY-1
retinol biosynthesis
-
-
PWY-6857
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
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PWY-5723
salidroside biosynthesis
-
-
PWY-6802
Salmonella enterica serotype O:13 O antigen biosynthesis
-
-
PWY-8230
sedoheptulose bisphosphate bypass
-
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PWY0-1517
serotonin degradation
-
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PWY-6313
sesamin biosynthesis
-
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PWY-5469
sitosterol degradation to androstenedione
-
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PWY-6948
sophorosyloxydocosanoate deacetylation
-
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SOPHOROSYLOXYDOCOSANOATE-DEG-PWY
spermidine biosynthesis I
-
-
BSUBPOLYAMSYN-PWY
spermidine biosynthesis III
-
-
PWY-6834
spermine and spermidine degradation II
-
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PWY-6440
spermine biosynthesis
-
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ARGSPECAT-PWY
sphingolipid biosynthesis (plants)
-
-
PWY-5129
Spodoptera littoralis pheromone biosynthesis
-
-
PWY-7656
sporopollenin precursors biosynthesis
-
-
PWY-6733
stachyose biosynthesis
-
-
PWY-5337
starch biosynthesis
-
-
PWY-622
starch degradation II
-
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PWY-6724
stellariose and mediose biosynthesis
-
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PWY-6525
stellatic acid biosynthesis
-
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PWY-7736
suberin monomers biosynthesis
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose biosynthesis II
-
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PWY-7238
sucrose biosynthesis III
-
-
PWY-7347
sucrose degradation V (sucrose alpha-glucosidase)
-
-
PWY66-373
sulfide oxidation IV (mitochondria)
-
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PWY-7927
sulfite oxidation II
-
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PWY-5279
sulfite oxidation III
-
-
PWY-5278
sulfite oxidation IV (sulfite oxidase)
-
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PWY-5326
superoxide radicals degradation
-
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
-
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PWY4LZ-257
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of methylsalicylate metabolism
-
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PWY18C3-25
superpathway of scopolin and esculin biosynthesis
-
-
PWY-7186
tetrahydrofolate biosynthesis I
-
-
PWY-6614
thioredoxin pathway
-
-
THIOREDOX-PWY
trans, trans-farnesyl diphosphate biosynthesis
-
-
PWY-5123
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
-
-
PWY-5410
triacylglycerol degradation
-
-
LIPAS-PWY
UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)
-
-
PWY-4841
vanillin biosynthesis I
-
-
PWY-5665
wax esters biosynthesis I
-
-
PWY-5884
xylan biosynthesis
-
-
PWY-5800
zymosterol biosynthesis
-
-
PWY-6074
bile acid biosynthesis, neutral pathway
-
-
PWY-6061
myo-inositol biosynthesis
-
-
PWY-2301
suberin monomers biosynthesis
-
-
PWY-1121
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ORGANISM
COMMENTARY
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
-
-
-
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY
LITERATURE
SOURCE
-
additional information
-
highly expressed in developing stem. Of the seven CAD genes identified in Brachypodium distachyon, BdCAD1 expression is greatest in stem tissue, exhibiting 10fold higher transcript level than any of the other seven BdCAD genes
additional information
-
expression patterns of roots, stems, and leaves, overview. 68 MAPKKK proteins encoded by 63 MAPKKK genes (22 MEKK subfamily members, 38 Raf subfamily members, and 3 ZIK subfamily members) are detected. BdMAPKKK genes expression patterns at different developmental stage tissues, two visualized hierarchy cluster of different developmental stages and organs are constructed
additional information
isozyme RGP3 expression is present in sheath and stem samples but not leaf blade samples regardless of developmental stage, RGP isozymes expression patterns in plant tissues, quantitative real-time PCR enzyme expression analysis, overview. RGP3 shows a low expression compared to the other isozymes
additional information
-
quantitative RT-PCR expression analysis, in the Bd4179 mutant, only internodes and peduncles show detectable activity
additional information
RGP isozymes expression patterns in plant tissues, quantitative real-time PCR enzyme expression analysis, overview
additional information
-
transcriptional profiling, BdXTH8, along with the other three genes in the grass-specific clade, is expressed in tissues that accumulate high amounts of MLG. BdXTH8 is highly coexpressed with the transcription factor BdTHX2 in addition to BdTHX1. BdXTH8 and BdTHX2 both have higher expression in elongating internodes and elongating leaf tissue than that in endosperm, while BdTHX1 shows expression in elongating internodes and endosperm tissues
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY
GeneOntology No.
LITERATURE
SOURCE
additional information
-
subcellular locations of MAKKK proteins in Brachypodium distachyon
-
LINKS TO OTHER DATABASES (specific for Brachypodium distachyon)
SILVA: 16S/18S rRNA, 23S/28S rRNA
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Release 2023.1 (January 2023)
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