Information on Organism Brachypodium distachyon

TaxTree of Organism Brachypodium distachyon
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
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(S)-propane-1,2-diol degradation
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(S)-reticuline biosynthesis I
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(S)-reticuline biosynthesis II
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1,5-anhydrofructose degradation
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1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza)
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1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium)
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2-arachidonoylglycerol biosynthesis
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3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
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3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
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3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
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3-(4-hydroxyphenyl)pyruvate biosynthesis
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3-methylbutanol biosynthesis (engineered)
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4-hydroxy-2-nonenal detoxification
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4-hydroxybenzoate biosynthesis I (eukaryotes)
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abscisic acid biosynthesis
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acetaldehyde biosynthesis I
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acetone degradation I (to methylglyoxal)
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acetone degradation III (to propane-1,2-diol)
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acetylene degradation (anaerobic)
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aerobic respiration III (alternative oxidase pathway)
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alanine metabolism
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all-trans-farnesol biosynthesis
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alpha-amyrin biosynthesis
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alpha-Linolenic acid metabolism
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Amaryllidacea alkaloids biosynthesis
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Amino sugar and nucleotide sugar metabolism
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Aminobenzoate degradation
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ammonia oxidation II (anaerobic)
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amygdalin and prunasin degradation
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Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine and proline metabolism
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Ascorbate and aldarate metabolism
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ascorbate glutathione cycle
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ascorbate metabolism
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ascorbate recycling (cytosolic)
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assimilatory sulfate reduction I
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assimilatory sulfate reduction III
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atromentin biosynthesis
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avenanthramide biosynthesis
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benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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Benzoxazinoid biosynthesis
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beta-(1,4)-mannan degradation
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beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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beta-alanine biosynthesis I
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beta-Alanine metabolism
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Bifidobacterium shunt
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bile acid biosynthesis, neutral pathway
Biosynthesis of ansamycins
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Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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bisabolene biosynthesis (engineered)
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bupropion degradation
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butanol and isobutanol biosynthesis (engineered)
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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C4 photosynthetic carbon assimilation cycle, NADP-ME type
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C4 photosynthetic carbon assimilation cycle, PEPCK type
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Caffeine metabolism
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Calvin-Benson-Bassham cycle
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camalexin biosynthesis
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capsiconiate biosynthesis
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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Carotenoid biosynthesis
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carotenoid biosynthesis
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cellulose biosynthesis
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Chloroalkane and chloroalkene degradation
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chlorophyll metabolism
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cholesterol biosynthesis
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cholesterol degradation to androstenedione I (cholesterol oxidase)
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cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
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chorismate biosynthesis from 3-dehydroquinate
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chorismate metabolism
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cinnamoyl-CoA biosynthesis
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CO2 fixation into oxaloacetate (anaplerotic)
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Cutin, suberine and wax biosynthesis
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Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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cytokinin-O-glucosides biosynthesis
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D-galactose detoxification
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d-mannose degradation
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d-xylose degradation
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degradation of hexoses
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denitrification
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di-myo-inositol phosphate biosynthesis
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diacylglycerol and triacylglycerol biosynthesis
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DIMBOA-glucoside biosynthesis
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dissimilatory sulfate reduction I (to hydrogen sufide))
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Diterpenoid biosynthesis
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divinyl ether biosynthesis II
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Drug metabolism - cytochrome P450
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Drug metabolism - other enzymes
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dTDP-4-O-demethyl-beta-L-noviose biosynthesis
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dTDP-beta-L-rhamnose biosynthesis
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dTDP-L-daunosamine biosynthesis
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dTDPLrhamnose biosynthesis
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ephedrine biosynthesis
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ergosterol biosynthesis II
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Escherichia coli serotype O86 O-antigen biosynthesis
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ethanol degradation I
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ethanol degradation II
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ethanol degradation IV
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ethanol fermentation
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ethanolamine utilization
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ethene biosynthesis I (plants)
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ethene biosynthesis III (microbes)
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ethene biosynthesis V (engineered)
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Ether lipid metabolism
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Fatty acid degradation
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ferulate and sinapate biosynthesis
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Flavonoid biosynthesis
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Folate biosynthesis
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folate transformations II (plants)
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folate transformations III (E. coli)
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formaldehyde assimilation I (serine pathway)
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formaldehyde assimilation II (assimilatory RuMP Cycle)
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formaldehyde assimilation III (dihydroxyacetone cycle)
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free phenylpropanoid acid biosynthesis
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fructan degradation
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Fructose and mannose metabolism
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Galactose metabolism
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GDP-mannose biosynthesis
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gibberellin biosynthesis III (early C-13 hydroxylation)
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gibberellin inactivation I (2beta-hydroxylation)
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ginsenoside metabolism
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ginsenosides biosynthesis
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gliotoxin biosynthesis
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gluconeogenesis
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gluconeogenesis I
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gluconeogenesis II (Methanobacterium thermoautotrophicum)
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glucosylglycerol biosynthesis
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Glutathione metabolism
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glutathione metabolism
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glutathione-mediated detoxification I
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glutathione-mediated detoxification II
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glutathione-peroxide redox reactions
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Glycerolipid metabolism
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Glycerophospholipid metabolism
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Glycine, serine and threonine metabolism
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glycogen biosynthesis
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glycogen biosynthesis I (from ADP-D-Glucose)
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glycogen biosynthesis II (from UDP-D-Glucose)
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glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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glycogen metabolism
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Glycolysis / Gluconeogenesis
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Glyoxylate and dicarboxylate metabolism
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gossypol biosynthesis
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heterolactic fermentation
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histamine degradation
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Histidine metabolism
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histidine metabolism
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hydroxycinnamic acid tyramine amides biosynthesis
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indole glucosinolate activation (intact plant cell)
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indole-3-acetate biosynthesis I
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indole-3-acetate biosynthesis II
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indole-3-acetate biosynthesis VI (bacteria)
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indolmycin biosynthesis
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Inositol phosphate metabolism
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isoprenoid biosynthesis
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Isoquinoline alkaloid biosynthesis
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jasmonic acid biosynthesis
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justicidin B biosynthesis
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L-ascorbate degradation II (bacterial, aerobic)
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L-ascorbate degradation III
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L-glutamine biosynthesis III
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L-isoleucine degradation II
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L-leucine degradation III
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L-methionine degradation III
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L-methionine salvage cycle II (plants)
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L-phenylalanine biosynthesis I
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L-phenylalanine degradation II (anaerobic)
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L-phenylalanine degradation III
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L-phenylalanine degradation IV (mammalian, via side chain)
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L-phenylalanine degradation VI (reductive Stickland reaction)
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L-tryptophan degradation IV (via indole-3-lactate)
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L-tryptophan degradation V (side chain pathway)
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L-tryptophan degradation VIII (to tryptophol)
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L-tryptophan degradation XIII (reductive Stickland reaction)
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L-tyrosine biosynthesis I
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L-tyrosine degradation I
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L-tyrosine degradation II
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L-tyrosine degradation III
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L-tyrosine degradation IV (to 4-methylphenol)
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L-tyrosine degradation V (reductive Stickland reaction)
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L-valine degradation II
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lanosterol biosynthesis
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leucine metabolism
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Linoleic acid metabolism
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lipid A biosynthesis
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lipid A-core biosynthesis (E. coli K-12)
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lipid metabolism
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lychnose and isolychnose biosynthesis
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Lysine degradation
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mangrove triterpenoid biosynthesis
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matairesinol biosynthesis
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melatonin degradation I
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Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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Methanobacterium thermoautotrophicum biosynthetic metabolism
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methanofuran biosynthesis
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methanol oxidation to formaldehyde IV
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methionine metabolism
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methyl indole-3-acetate interconversion
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methyl phomopsenoate biosynthesis
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methylsalicylate degradation
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Microbial metabolism in diverse environments
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mixed acid fermentation
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mucin core 1 and core 2 O-glycosylation
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Mucin type O-glycan biosynthesis
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mycothiol biosynthesis
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myo-inositol biosynthesis
N-methyl-Delta1-pyrrolinium cation biosynthesis
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NAD metabolism
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Naphthalene degradation
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Nicotinate and nicotinamide metabolism
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nicotine degradation IV
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nicotine degradation V
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nitrate reduction I (denitrification)
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nitrate reduction II (assimilatory)
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nitrate reduction VII (denitrification)
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nitrifier denitrification
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nitrite-dependent anaerobic methane oxidation
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Nitrogen metabolism
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non-pathway related
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noradrenaline and adrenaline degradation
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nucleoside and nucleotide degradation (archaea)
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O-antigen biosynthesis
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octopamine biosynthesis
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oleandomycin activation/inactivation
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One carbon pool by folate
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Other glycan degradation
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Other types of O-glycan biosynthesis
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partial TCA cycle (obligate autotrophs)
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pectin degradation I
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pectin degradation II
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pentachlorophenol degradation
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pentacyclic triterpene biosynthesis
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Pentose and glucuronate interconversions
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Pentose phosphate pathway
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pentose phosphate pathway
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pentose phosphate pathway (non-oxidative branch) I
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pentose phosphate pathway (non-oxidative branch) II
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pentose phosphate pathway (partial)
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phenolic malonylglucosides biosynthesis
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Phenylalanine metabolism
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phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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phenylethanol biosynthesis
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phenylpropanoid biosynthesis
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Phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis, initial reactions
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phenylpropanoids methylation (ice plant)
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phosphate acquisition
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phosphatidylinositol biosynthesis I (bacteria)
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phospholipases
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photosynthesis
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phytol degradation
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plasmalogen biosynthesis
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plasmalogen degradation
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Polyketide sugar unit biosynthesis
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Porphyrin and chlorophyll metabolism
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Primary bile acid biosynthesis
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propanol degradation
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protein ubiquitination
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Purine metabolism
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purine metabolism
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pyruvate fermentation to ethanol I
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pyruvate fermentation to ethanol II
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pyruvate fermentation to ethanol III
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pyruvate fermentation to isobutanol (engineered)
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Pyruvate metabolism
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reactive oxygen species degradation
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reductive TCA cycle I
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retinol biosynthesis
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Retinol metabolism
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Riboflavin metabolism
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rosmarinic acid biosynthesis I
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Rubisco shunt
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salidroside biosynthesis
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Selenocompound metabolism
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selenocysteine biosynthesis
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serotonin degradation
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sesamin biosynthesis
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Sesquiterpenoid and triterpenoid biosynthesis
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sitosterol degradation to androstenedione
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sophorosyloxydocosanoate deacetylation
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spermidine biosynthesis I
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spermidine biosynthesis III
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spermine and spermidine degradation II
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spermine biosynthesis
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sphingolipid biosynthesis (plants)
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Sphingolipid metabolism
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stachyose biosynthesis
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stachyose degradation
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Starch and sucrose metabolism
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starch biosynthesis
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starch degradation
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stellariose and mediose biosynthesis
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stellatic acid biosynthesis
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Steroid biosynthesis
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Steroid hormone biosynthesis
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Stilbenoid, diarylheptanoid and gingerol biosynthesis
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Streptomycin biosynthesis
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suberin monomers biosynthesis
sucrose biosynthesis I (from photosynthesis)
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sucrose biosynthesis II
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sucrose biosynthesis III
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sucrose degradation II (sucrose synthase)
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sulfate reduction
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sulfide oxidation IV (mitochondria)
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sulfite oxidation II
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sulfite oxidation III
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sulfite oxidation IV (sulfite oxidase)
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Sulfur metabolism
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superoxide radicals degradation
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superpathway of fermentation (Chlamydomonas reinhardtii)
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superpathway of glucose and xylose degradation
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superpathway of methylsalicylate metabolism
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superpathway of scopolin and esculin biosynthesis
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Terpenoid backbone biosynthesis
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tetrahydrofolate biosynthesis
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tetrahydrofolate metabolism
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Thiamine metabolism
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thioredoxin pathway
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trans, trans-farnesyl diphosphate biosynthesis
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traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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triacylglycerol degradation
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Tryptophan metabolism
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tryptophan metabolism
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type I lipoteichoic acid biosynthesis (S. aureus)
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Tyrosine metabolism
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tyrosine metabolism
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Ubiquinone and other terpenoid-quinone biosynthesis
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UDP-alpha-D-glucose biosynthesis
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valine metabolism
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Valine, leucine and isoleucine degradation
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vanillin biosynthesis I
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vitamin B1 metabolism
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Vitamin B6 metabolism
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xylan biosynthesis
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Zeatin biosynthesis
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
additional information
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subcellular locations of MAKKK proteins in Brachypodium distachyon
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Manually annotated by BRENDA team
LINKS TO OTHER DATABASES (specific for Brachypodium distachyon)