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Literature summary extracted from

  • Watson-Lazowski, A.; Papanicolaou, A.; Sharwood, R.; Ghannoum, O.
    Investigating the NAD-ME biochemical pathway within C4 grasses using transcript and amino acid variation in C4 photosynthetic genes (2018), Photosynth. Res., 138, 233-248.
    View publication on PubMed

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
1.1.1.39 mitochondrion
-
 Panicum coloratum 5739
-
1.1.1.39 mitochondrion
-
 Panicum virgatum 5739
-
1.1.1.39 mitochondrion
-
 Disakisperma dubium 5739
-
1.1.1.39 mitochondrion
-
 Diplachne fusca 5739
-
1.1.1.39 mitochondrion
-
 Astrebla pectinata 5739
-
1.1.1.40 chloroplast
-
 Echinochloa frumentacea 9507
-
1.1.1.40 chloroplast
-
 Janochloa antidotale 9507
-
1.1.1.40 chloroplast
-
 Axonopus fissifolius 9507
-
1.1.1.40 chloroplast
-
 Sorghum bicolor 9507
-

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
1.1.1.39 (S)-malate + NAD+ Panicum coloratum
-
 pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+ Panicum virgatum
-
 pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+ Disakisperma dubium
-
 pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+ Diplachne fusca
-
 pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+ Astrebla pectinata
-
 pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+ Panicum coloratum
-
 (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+ Panicum virgatum
-
 (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+ Disakisperma dubium
-
 (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+ Diplachne fusca
-
 (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+ Astrebla pectinata
-
 (S)-malate + NAD+
-
 r
1.1.1.40 (S)-malate + NADP+ Echinochloa frumentacea
-
 pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 (S)-malate + NADP+ Janochloa antidotale
-
 pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 (S)-malate + NADP+ Axonopus fissifolius
-
 pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 (S)-malate + NADP+ Sorghum bicolor
-
 pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+ Echinochloa frumentacea
-
 (S)-malate + NADP+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+ Janochloa antidotale
-
 (S)-malate + NADP+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+ Axonopus fissifolius
-
 (S)-malate + NADP+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+ Sorghum bicolor
-
 (S)-malate + NADP+
-
 r

Organism

EC Number Organism UniProt Comment Textmining
1.1.1.39 Astrebla pectinata
-
-
-
1.1.1.39 Diplachne fusca
-
-
-
1.1.1.39 Disakisperma dubium
-
-
-
1.1.1.39 Panicum coloratum
-
-
-
1.1.1.39 Panicum virgatum
-
-
-
1.1.1.40 Axonopus fissifolius
-
-
-
1.1.1.40 Echinochloa frumentacea
-
-
-
1.1.1.40 Janochloa antidotale
-
-
-
1.1.1.40 Sorghum bicolor
-
-
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
1.1.1.39 bundle sheath
-
 Panicum coloratum
-
1.1.1.39 bundle sheath
-
 Panicum virgatum
-
1.1.1.39 bundle sheath
-
 Disakisperma dubium
-
1.1.1.39 bundle sheath
-
 Diplachne fusca
-
1.1.1.39 bundle sheath
-
 Astrebla pectinata
-
1.1.1.40 mesophyll
-
 Echinochloa frumentacea
-
1.1.1.40 mesophyll
-
 Janochloa antidotale
-
1.1.1.40 mesophyll
-
 Axonopus fissifolius
-
1.1.1.40 mesophyll
-
 Sorghum bicolor
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.1.1.39 (S)-malate + NAD+
-
 Panicum coloratum pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+
-
 Panicum virgatum pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+
-
 Disakisperma dubium pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+
-
 Diplachne fusca pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 (S)-malate + NAD+
-
 Astrebla pectinata pyruvate + CO2 + NADH + H+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+
-
 Panicum coloratum (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+
-
 Panicum virgatum (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+
-
 Disakisperma dubium (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+
-
 Diplachne fusca (S)-malate + NAD+
-
 r
1.1.1.39 pyruvate + CO2 + NADH + H+
-
 Astrebla pectinata (S)-malate + NAD+
-
 r
1.1.1.40 (S)-malate + NADP+
-
 Echinochloa frumentacea pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 (S)-malate + NADP+
-
 Janochloa antidotale pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 (S)-malate + NADP+
-
 Axonopus fissifolius pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 (S)-malate + NADP+
-
 Sorghum bicolor pyruvate + CO2 + NADPH + H+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+
-
 Echinochloa frumentacea (S)-malate + NADP+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+
-
 Janochloa antidotale (S)-malate + NADP+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+
-
 Axonopus fissifolius (S)-malate + NADP+
-
 r
1.1.1.40 pyruvate + CO2 + NADPH + H+
-
 Sorghum bicolor (S)-malate + NADP+
-
 r

Synonyms

EC Number Synonyms Comment Organism
1.1.1.39 NAD-malic enzyme
-
 Panicum coloratum
1.1.1.39 NAD-malic enzyme
-
 Panicum virgatum
1.1.1.39 NAD-malic enzyme
-
 Disakisperma dubium
1.1.1.39 NAD-malic enzyme
-
 Diplachne fusca
1.1.1.39 NAD-malic enzyme
-
 Astrebla pectinata
1.1.1.39 NAD-ME1 isoform Panicum coloratum
1.1.1.39 NAD-ME1 isoform Panicum virgatum
1.1.1.39 NAD-ME1 isoform Disakisperma dubium
1.1.1.39 NAD-ME1 isoform Diplachne fusca
1.1.1.39 NAD-ME1 isoform Astrebla pectinata
1.1.1.39 NAD-ME2 isoform Panicum coloratum
1.1.1.39 NAD-ME2 isoform Panicum virgatum
1.1.1.39 NAD-ME2 isoform Disakisperma dubium
1.1.1.39 NAD-ME2 isoform Diplachne fusca
1.1.1.39 NAD-ME2 isoform Astrebla pectinata
1.1.1.40 NADP-dependent malate dehydrogenase
-
 Echinochloa frumentacea
1.1.1.40 NADP-dependent malate dehydrogenase
-
 Janochloa antidotale
1.1.1.40 NADP-dependent malate dehydrogenase
-
 Axonopus fissifolius
1.1.1.40 NADP-dependent malate dehydrogenase
-
 Sorghum bicolor
1.1.1.40 NADP-malic enzyme
-
 Echinochloa frumentacea
1.1.1.40 NADP-malic enzyme
-
 Janochloa antidotale
1.1.1.40 NADP-malic enzyme
-
 Axonopus fissifolius
1.1.1.40 NADP-malic enzyme
-
 Sorghum bicolor
1.1.1.40 NADP-MDH
-
 Echinochloa frumentacea
1.1.1.40 NADP-MDH
-
 Janochloa antidotale
1.1.1.40 NADP-MDH
-
 Axonopus fissifolius
1.1.1.40 NADP-MDH
-
 Sorghum bicolor

Cofactor

EC Number Cofactor Comment Organism Structure
1.1.1.39 NAD+
-
 Panicum coloratum
1.1.1.39 NAD+
-
 Panicum virgatum
1.1.1.39 NAD+
-
 Disakisperma dubium
1.1.1.39 NAD+
-
 Diplachne fusca
1.1.1.39 NAD+
-
 Astrebla pectinata
1.1.1.39 NADH
-
 Panicum coloratum
1.1.1.39 NADH
-
 Panicum virgatum
1.1.1.39 NADH
-
 Disakisperma dubium
1.1.1.39 NADH
-
 Diplachne fusca
1.1.1.39 NADH
-
 Astrebla pectinata
1.1.1.40 NADP+
-
 Echinochloa frumentacea
1.1.1.40 NADP+
-
 Janochloa antidotale
1.1.1.40 NADP+
-
 Axonopus fissifolius
1.1.1.40 NADP+
-
 Sorghum bicolor
1.1.1.40 NADPH
-
 Echinochloa frumentacea
1.1.1.40 NADPH
-
 Janochloa antidotale
1.1.1.40 NADPH
-
 Axonopus fissifolius
1.1.1.40 NADPH
-
 Sorghum bicolor