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Literature summary extracted from

  • Basak, N.; Krishnan, V.; Pandey, V.; Punjabi, M.; Hada, A.; Marathe, A.; Jolly, M.; Palaka, B.K.; Ampasala, D.R.; Sachdev, A.
    Expression profiling and in silico homology modeling of inositol pentakisphosphate 2-kinase, a potential candidate gene for low phytate trait in soybean (2020), 3 Biotech, 10, 268 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
2.7.1.158 gene Glyma04g03240, sequence comaprisons and phylogenetic tree, quantitative real-time expression analysis Glycine max
2.7.1.158 gene Glyma06g03310, sequence comaprisons and phylogenetic tree, quantitative real-time expression analysis Glycine max
2.7.1.158 gene GmIpk1, sequence comparisons and phylogenetic tree, quantitative real-time expression analysis Glycine max

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
2.7.1.158 Mg2+ required Glycine max

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
2.7.1.158 ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate Glycine max
-
 ADP + 1D-myo-inositol hexakisphosphate
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
2.7.1.158 Glycine max I1JT87 var. Pusa 9712
-
2.7.1.158 Glycine max U5TRK1 var. Pusa 9712
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
2.7.1.158 flower low expression Glycine max
-
2.7.1.158 flower moderate expression Glycine max
-
2.7.1.158 flower very low expression Glycine max
-
2.7.1.158 leaf very low expression Glycine max
-
2.7.1.158 leaf low to moderate expression Glycine max
-
2.7.1.158 root very low expression Glycine max
-
2.7.1.158 seed developing, low expression Glycine max
-
2.7.1.158 seed developing, very high expression Glycine max
-
2.7.1.158 stem moderate expression Glycine max
-
2.7.1.158 stem very low expression Glycine max
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
2.7.1.158 ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate
-
 Glycine max ADP + 1D-myo-inositol hexakisphosphate
-
 ?
2.7.1.158 additional information binding sites of ADP and IP6 are observed to be present side by side with few common interacting amino acid residues: R193, K171. The residues that are making interactions with ADP include W130, K171, R193, H197, K201, Q204, and N239, whereas the residues that are making interactions with IP6 include G17, E18, G19, A20, N22, L23, V24, R40, K43, R131, R169, K171, R193, R242, and S373 Glycine max ?
-
-

Subunits

EC Number Subunits Comment Organism
2.7.1.158 More secondary structure prediction revealing that 74.46% of amino acids are in alpha-helix, whereas 57.64% of residues in beta-sheets and 12.19% in coil conformations, structure modeling, overview Glycine max

Synonyms

EC Number Synonyms Comment Organism
2.7.1.158 Glyma04g03240
-
 Glycine max
2.7.1.158 Glyma06g03310
-
 Glycine max
2.7.1.158 GmIpk1
-
 Glycine max
2.7.1.158 inositol pentakisphosphate 2-kinase
-
 Glycine max
2.7.1.158 Ipk1
-
 Glycine max

Cofactor

EC Number Cofactor Comment Organism Structure
2.7.1.158 ATP
-
 Glycine max

General Information

EC Number General Information Comment Organism
2.7.1.158 evolution differential spatial and temporal expression profiling of gene GmIpk1 and its two homologues Glyma06g03310 and Glyma04g03310 in Glycine max Glycine max
2.7.1.158 metabolism inositol 1,3,4,5,6-pentakisphosphate 2-kinase catalyzes the terminal step in the phytic acid biosynthetic pathway Glycine max
2.7.1.158 metabolism nositol 1,3,4,5,6-pentakisphosphate 2-kinase catalyzes the terminal step in the phytic acid biosynthetic pathway Glycine max
2.7.1.158 additional information molecular docking study Glycine max
2.7.1.158 additional information three-dimensional homolgy modelling, GmIPK1 protein model (PMD ID PM0079931), using Arabidopsis thaliana enzyme structure (PDB ID 4AQK) as template, structure-function relationship of GmIPK1, molecular dynamics simulations and molecular docking study, overview Glycine max
2.7.1.158 physiological function GmIPK1 plays a significant role in phytate synthesis Glycine max