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Literature summary extracted from

  • Moller, A.G.; Liang, C.
    Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics (2017), PeerJ, 5, e2844 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
2.7.1.29 genes dhaL and dhaK, DNA and amino acid sequence determination and analysis phylogenetic analysis Haloquadratum walsbyi
2.7.1.29 genes dhaL and dhaK, DNA and amino acid sequence determination and analysis phylogenetic analysis Halorubrum lacusprofundi

Protein Variants

EC Number Protein Variants Comment Organism
2.7.1.29 additional information by using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts Haloquadratum walsbyi
2.7.1.29 additional information by using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts Halorubrum lacusprofundi

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
2.7.1.29 ATP + glycerone Haloquadratum walsbyi
-
 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone Halorubrum lacusprofundi
-
 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone Haloquadratum walsbyi DSM 16854
-
 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone Halorubrum lacusprofundi ATCC 49239
-
 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone Haloquadratum walsbyi C23
-
 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone Haloquadratum walsbyi JCM 12705
-
 ADP + glycerone phosphate
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
2.7.1.29 Haloquadratum walsbyi G0LLJ3 AND G0LLJ4 dihydroxyacetone kinase subunits DhaK and DhaL
-
2.7.1.29 Haloquadratum walsbyi C23 G0LLJ3 AND G0LLJ4 dihydroxyacetone kinase subunits DhaK and DhaL
-
2.7.1.29 Haloquadratum walsbyi DSM 16854 G0LLJ3 AND G0LLJ4 dihydroxyacetone kinase subunits DhaK and DhaL
-
2.7.1.29 Haloquadratum walsbyi JCM 12705 G0LLJ3 AND G0LLJ4 dihydroxyacetone kinase subunits DhaK and DhaL
-
2.7.1.29 Halorubrum lacusprofundi B9LNV8 AND B9LNV9 dihydroxyacetone kinase subunits DhaK and DhaL
-
2.7.1.29 Halorubrum lacusprofundi ATCC 49239 B9LNV8 AND B9LNV9 dihydroxyacetone kinase subunits DhaK and DhaL
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
2.7.1.29 ATP + glycerone
-
 Haloquadratum walsbyi ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone
-
 Halorubrum lacusprofundi ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone dihydroxyacetone Haloquadratum walsbyi ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone dihydroxyacetone Halorubrum lacusprofundi ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone
-
 Haloquadratum walsbyi DSM 16854 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone dihydroxyacetone Haloquadratum walsbyi DSM 16854 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone
-
 Halorubrum lacusprofundi ATCC 49239 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone dihydroxyacetone Halorubrum lacusprofundi ATCC 49239 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone
-
 Haloquadratum walsbyi C23 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone dihydroxyacetone Haloquadratum walsbyi C23 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone
-
 Haloquadratum walsbyi JCM 12705 ADP + glycerone phosphate
-
 ?
2.7.1.29 ATP + glycerone dihydroxyacetone Haloquadratum walsbyi JCM 12705 ADP + glycerone phosphate
-
 ?

Synonyms

EC Number Synonyms Comment Organism
2.7.1.29 DhaK
-
 Haloquadratum walsbyi
2.7.1.29 DhaK
-
 Halorubrum lacusprofundi
2.7.1.29 DhaL
-
 Haloquadratum walsbyi
2.7.1.29 DhaL
-
 Halorubrum lacusprofundi
2.7.1.29 dihydroxyacetone kinase
-
 Haloquadratum walsbyi
2.7.1.29 dihydroxyacetone kinase
-
 Halorubrum lacusprofundi

General Information

EC Number General Information Comment Organism
2.7.1.29 evolution analysis of the glycerol metabolism genes in metagenomes suggests that Halorubrum and Haloquadratum possess mostly dihydroxyacetone kinase genes while Salinibacter possesses mostly glycerol-3-phosphate dehydrogenase genes. Family abundance of genes dhaL and dhaK, phylogenetic analysis. Across gene family, taxonomic affiliations of the dihydroxyacetone kinase families are closest to each other, as well as those of the alcohol dehydrogenase (Fe-ADH) and glycerol kinase (FGGY) gene families. Haloquadratum associates with dihydroxyacetone kinase gene families in the SS19, SS33, and SS37 metagenomes. By using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts Haloquadratum walsbyi
2.7.1.29 evolution analysis of the glycerol metabolism genes in metagenomes suggests that Halorubrum and Haloquadratum possess mostly dihydroxyacetone kinase genes while Salinibacter possesses mostly glycerol-3-phosphate dehydrogenase genes. Family abundance of genes dhaL and dhaK, phylogenetic analysis. Across gene family, taxonomic affiliations of the dihydroxyacetone kinase families are closest to each other, as well as those of the alcohol dehydrogenase (Fe-ADH) and glycerol kinase (FGGY) gene families. Halorubrum associates with dihydroxyacetone kinase gene families in the IC21 and Cahuil metagenomes. By using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts Halorubrum lacusprofundi
2.7.1.29 additional information biological plausibility of virus-host associations, overview. Map of virus-host interactions generated by aligning spacers detected with reference-guided methods in metagenomes SS13, SS19, SS33, SS37, IC21, and Cahuil/C34 Haloquadratum walsbyi
2.7.1.29 additional information biological plausibility of virus-host associations, overview. Map of virus-host interactions generated by aligning spacers detected with reference-guided methods in metagenomes SS13, SS19, SS33, SS37, IC21, and Cahuil/C34 Halorubrum lacusprofundi