Any feedback?
Please rate this page
(literature.php)
(0/150)

BRENDA support

Literature summary extracted from

  • Li, Q.; Li, H.; Yin, C.; Wang, X.; Jiang, Q.; Zhang, R.; Ge, F.; Chen, Y.; Yang, L.
    Genome-wide identification and characterization of xyloglucan endotransglycosylase/hydrolase in ananas comosus during development (2019), Genes (Basel), 10, 537 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
2.4.1.207 identification of several genes designated Ac(F153)XTH1 to Ac(F153)XTH24, sequence comparisons and phylogenetic analysis, genetic structure analysis and pattern of the motif in XTHs, genome-wide analysis, quantitative real-time PCR expression analysis. Detailed overview Ananas comosus
2.4.1.207 identification of several genes designated Ac(MD2)XTH1 to Ac(MD2)XTH24, sequence comparisons and phylogenetic analysis, genetic structure analysis and pattern of the motif in XTHs, genome-wide analysis, quantitative real-time PCR expression analysis. Detailed overview Ananas comosus

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
2.4.1.207 cell wall XTH1-24 Ananas comosus 5618
-
2.4.1.207 cytoplasm XTH2, 3, 4, 5, 9, 10, and 13 Ananas comosus 5737
-
2.4.1.207 cytoplasm XTH2, 3, and 9-13 Ananas comosus 5737
-

Organism

EC Number Organism UniProt Comment Textmining
2.4.1.207 Ananas comosus
-
 cultivar F153
-
2.4.1.207 Ananas comosus
-
 cultivar MD2
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
2.4.1.207 fruit
-
 Ananas comosus
-
2.4.1.207 leaf
-
 Ananas comosus
-
2.4.1.207 leaf highest expression of Ac(MD2)2XTH13 Ananas comosus
-
2.4.1.207 additional information Ac(MD2)XTH15 shows the highest relative expression level in the green leaf tip, sequentially in the root, and finally in the white leaf base Ananas comosus
-
2.4.1.207 root highest expression of Ac(MD2)XTH18 Ananas comosus
-

Subunits

EC Number Subunits Comment Organism
2.4.1.207 ? x * 25990-64580, XTH1-24, sequence calculation Ananas comosus
2.4.1.207 ? x * 30560-39410, XTH1-24, sequence calculation Ananas comosus

Synonyms

EC Number Synonyms Comment Organism
2.4.1.207 Ac(F153)XTH1
-
 Ananas comosus
2.4.1.207 Ac(MD2)XTH1
-
 Ananas comosus
2.4.1.207 XTH1
-
 Ananas comosus

pI Value

EC Number Organism Comment pI Value Maximum pI Value
2.4.1.207 Ananas comosus XTH1-24, sequence calculation 9.04 4.68
2.4.1.207 Ananas comosus XTH1-24, sequence calculation 9.53 4.69

General Information

EC Number General Information Comment Organism
2.4.1.207 evolution endoglucanase family 16 members are identified in addition to XTHs of glycoside hydrolase family 16. Phylogenetic analysis clusters the XTHs into three major groups (group I/II, III and ancestral group), group III is subdivided into group IIIA and group IIIB. Similar gene structure and motif number are observed within a group. Two highly conserved domains, glycosyl hydrolase family 16 (GH16-XET) and xyloglucan endotransglycosylase C-terminus (C-XET), are detected by multiple sequences alignment of all XTHs. Segmental replication are detected in the two cultivars, with only the paralogous pair Ac(F153)XTH7-Ac(F153)XTH18 presented in F153 prior to genomic expansion. Genome-wide analysis. Ka/Ks analysis and estimated divergence time of XTHs, detailed phylogenetic analysis and evolutionary relationships, overview Ananas comosus
2.4.1.207 evolution endoglucanase family 16 members are identified in addition to XTHs of glycoside hydrolase family 16. Phylogenetic analysis clusters the XTHs into three major groups (group I/II, III and ancestral group), group III is subdivided into group IIIA and group IIIB. Similar gene structure and motif number are observed within a group. Two highly conserved domains, glycosyl hydrolase family 16 (GH16-XET) and xyloglucan endotransglycosylase C-terminus (C-XET), are detected by multiple sequences alignment of all XTHs. Segmental replication are detected in the two cultivars, with only the paralogous pair Ac(F153)XTH7-Ac(F153)XTH18 presented in F153 prior to genomic expansion. Ka/Ks analysis and estimated divergence time of XTHs, detailed phylogenetic analysis and evolutionary relationships, overview Ananas comosus
2.4.1.207 physiological function transcriptomic analysis indicates that XTHs are involved in the regulation of fruit ripening and crassulacean acid metabolism with tissue specificity, and quantitative real-time PCR expression analysis suggests that Ac(MD2)XTH18 is involved in root growth. XTH proteins perform two diverse catalytic activities: xyloglucan endohydrolase (XEH) and xyloglucan endotransglycosylase (XET) Ananas comosus
2.4.1.207 physiological function transcriptomic analysis indicates that XTHs are involved in the regulation of fruit ripening and crassulacean acid metabolism with tissue specificity. XTH proteins perform two diverse catalytic activities: xyloglucan endohydrolase (XEH) and xyloglucan endotransglycosylase (XET) Ananas comosus