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Literature summary extracted from

  • Zeng, Y.X.; Qiao, Z.Y.
    Diversity of dimethylsulfoniopropionate degradation genes reveals the significance of marine Roseobacter clade in sulfur metabolism in coastal areas of antarctic Maxwell Bay (2019), Curr. Microbiol., 76, 967-974 .
    View publication on PubMed

Cloned(Commentary)

EC Number Cloned (Comment) Organism
2.1.1.269 gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview Roseobacter sp.
2.1.1.269 gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview Sulfitobacter sp.
2.1.1.269 gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview Litoreibacter sp.
2.1.1.269 gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview Loktanella sp.
2.1.1.269 gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview Octadecabacter sp.
2.1.1.269 gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview Ruegeria sp.

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate Roseobacter sp.
-
 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate Sulfitobacter sp.
-
 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate Litoreibacter sp.
-
 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate Loktanella sp.
-
 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate Octadecabacter sp.
-
 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate Ruegeria sp.
-
 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
2.1.1.269 Litoreibacter sp.
-
-
-
2.1.1.269 Loktanella sp.
-
-
-
2.1.1.269 Octadecabacter sp.
-
-
-
2.1.1.269 Roseobacter sp.
-
-
-
2.1.1.269 Ruegeria sp.
-
-
-
2.1.1.269 Sulfitobacter sp.
-
-
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate
-
 Roseobacter sp. 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate
-
 Sulfitobacter sp. 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate
-
 Litoreibacter sp. 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate
-
 Loktanella sp. 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate
-
 Octadecabacter sp. 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?
2.1.1.269 S,S-dimethyl-beta-propiothetin + tetrahydrofolate
-
 Ruegeria sp. 3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
 ?

Synonyms

EC Number Synonyms Comment Organism
2.1.1.269 DmdA
-
 Roseobacter sp.
2.1.1.269 DmdA
-
 Sulfitobacter sp.
2.1.1.269 DmdA
-
 Litoreibacter sp.
2.1.1.269 DmdA
-
 Loktanella sp.
2.1.1.269 DmdA
-
 Octadecabacter sp.
2.1.1.269 DmdA
-
 Ruegeria sp.
2.1.1.269 DMSP demethylase
-
 Roseobacter sp.
2.1.1.269 DMSP demethylase
-
 Sulfitobacter sp.
2.1.1.269 DMSP demethylase
-
 Litoreibacter sp.
2.1.1.269 DMSP demethylase
-
 Loktanella sp.
2.1.1.269 DMSP demethylase
-
 Octadecabacter sp.
2.1.1.269 DMSP demethylase
-
 Ruegeria sp.

Cofactor

EC Number Cofactor Comment Organism Structure
2.1.1.269 tetrahydrofolate
-
 Roseobacter sp.
2.1.1.269 tetrahydrofolate
-
 Sulfitobacter sp.
2.1.1.269 tetrahydrofolate
-
 Litoreibacter sp.
2.1.1.269 tetrahydrofolate
-
 Loktanella sp.
2.1.1.269 tetrahydrofolate
-
 Octadecabacter sp.
2.1.1.269 tetrahydrofolate
-
 Ruegeria sp.

General Information

EC Number General Information Comment Organism
2.1.1.269 evolution analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within the Roseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview Roseobacter sp.
2.1.1.269 evolution analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within the Roseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview Litoreibacter sp.
2.1.1.269 evolution analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview Sulfitobacter sp.
2.1.1.269 evolution analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview Loktanella sp.
2.1.1.269 evolution analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview Octadecabacter sp.
2.1.1.269 evolution analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview Ruegeria sp.
2.1.1.269 metabolism both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments Roseobacter sp.
2.1.1.269 metabolism both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments Sulfitobacter sp.
2.1.1.269 metabolism both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments Litoreibacter sp.
2.1.1.269 metabolism both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments Loktanella sp.
2.1.1.269 metabolism both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments Octadecabacter sp.
2.1.1.269 metabolism both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments Ruegeria sp.
2.1.1.269 physiological function Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay Roseobacter sp.
2.1.1.269 physiological function Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay Sulfitobacter sp.
2.1.1.269 physiological function Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay Litoreibacter sp.
2.1.1.269 physiological function Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay Loktanella sp.
2.1.1.269 physiological function Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay Octadecabacter sp.
2.1.1.269 physiological function Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay Ruegeria sp.