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Literature summary extracted from

  • Liu, J.; Sharma, A.; Niewiara, M.; Singh, R.; Ming, R.; Yu, Q.
    Papain-like cysteine proteases in Carica papaya lineage-specific gene duplication and expansion (2018), BMC Genomics, 19, 26 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
3.4.22.2 gene CpXCP5, genotyping using the peptidase_C1 domain, phylogenetic analysis and tree, quantitative real-time PCR enzyme expression analysis Carica papaya
3.4.22.6 gene CpXCP8, genotyping using the peptidase_C1 domain, phylogenetic analysis and tree, quantitative real-time PCR enzyme expression analysis Carica papaya
3.4.22.25 gene CpXCP7, genotyping using the peptidase_C1 domain, phylogenetic analysis and tree, quantitative real-time PCR enzyme expression analysis Carica papaya
3.4.22.30 genotyping using the peptidase_C1 domain, phylogenetic analysis and tree, quantitative real-time PCR enzyme expression analysis Carica papaya

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
3.4.22.2 extracellular
-
 Carica papaya
-
-
3.4.22.6 extracellular
-
 Carica papaya
-
-
3.4.22.25 extracellular
-
 Carica papaya
-
-
3.4.22.30 extracellular
-
 Carica papaya
-
-

Organism

EC Number Organism UniProt Comment Textmining
3.4.22.2 Carica papaya P00784 var. Zhonghuang
-
3.4.22.6 Carica papaya P14080 var. Zhonghuang
-
3.4.22.25 Carica papaya P05994 var. Zhonghuang
-
3.4.22.30 Carica papaya P10056 var. Zhonghuang
-

Purification (Commentary)

EC Number Purification (Comment) Organism
3.4.22.2 native enzyme from latex Carica papaya
3.4.22.6 native enzyme from latex Carica papaya
3.4.22.25 native enzyme from latex Carica papaya
3.4.22.30 native enzyme from latex Carica papaya

Source Tissue

EC Number Source Tissue Comment Organism Textmining
3.4.22.2 fruit green fruit skin has the highest enzyme content, ripening decreases the enzyme level Carica papaya
-
3.4.22.2 latex Papaya latex is usually harvested from fruit skin of green papaya fruits by mechanical wounding Carica papaya
-
3.4.22.2 leaf
-
 Carica papaya
-
3.4.22.2 additional information gene expression patterns of the papaya PLCP genes in different tissues are assessed by transcriptome sequencing and quantitative RT-PCR. Most of the papaya PLCP genes of subfamily III are expressed at high levels in leaf and green fruit tissues Carica papaya
-
3.4.22.6 fruit green fruit skin has the highest enzyme content, ripening decreases the enzyme level Carica papaya
-
3.4.22.6 latex Papaya latex is usually harvested from fruit skin of green papaya fruits by mechanical wounding Carica papaya
-
3.4.22.6 leaf
-
 Carica papaya
-
3.4.22.6 additional information gene expression patterns of the papaya PLCP genes in different tissues are assessed by transcriptome sequencing and quantitative RT-PCR. Most of the papaya PLCP genes of subfamily III are expressed at high levels in leaf and green fruit tissues Carica papaya
-
3.4.22.25 fruit green fruit skin has the highest enzyme content, ripening decreases the enzyme level Carica papaya
-
3.4.22.25 latex Papaya latex is usually harvested from fruit skin of green papaya fruits by mechanical wounding Carica papaya
-
3.4.22.25 leaf
-
 Carica papaya
-
3.4.22.25 additional information gene expression patterns of the papaya PLCP genes in different tissues are assessed by transcriptome sequencing and quantitative RT-PCR. Most of the papaya PLCP genes of subfamily III are expressed at high levels in leaf and green fruit tissues Carica papaya
-
3.4.22.30 fruit green fruit skin has the highest enzyme content, ripening decreases the enzyme level Carica papaya
-
3.4.22.30 latex Papaya latex is usually harvested from fruit skin of green papaya fruits by mechanical wounding Carica papaya
-
3.4.22.30 leaf
-
 Carica papaya
-
3.4.22.30 additional information gene expression patterns of the papaya PLCP genes in different tissues are assessed by transcriptome sequencing and quantitative RT-PCR. Most of the papaya PLCP genes of subfamily III are expressed at high levels in leaf and green fruit tissues Carica papaya
-

Synonyms

EC Number Synonyms Comment Organism
3.4.22.2 CpXCP5
-
 Carica papaya
3.4.22.2 Papaya proteinase I UniProt Carica papaya
3.4.22.6 CpXCP8
-
 Carica papaya
3.4.22.6 papaya proteinase II UniProt Carica papaya
3.4.22.25 CpXCP7
-
 Carica papaya
3.4.22.25 Papaya proteinase 4 UniProt Carica papaya
3.4.22.30 Papaya proteinase III UniProt Carica papaya

General Information

EC Number General Information Comment Organism
3.4.22.2 evolution all four major papain-like cysteine proteases (PLCPs) purified from papaya latex, including papain, chymopapain, glycyl endopeptidase and caricain, are grouped into the lineage-specific expansion branch in the subfamily III of papain-like cysteine proteases (PLCPs). Tandem duplications play the dominant role in affecting copy number of PLCPs in plants. Significant variations in size of the PLCP subfamilies among species may reflect genetic adaptation of plant species to different environments. The lineage-specific expansion of papaya PLCPs of subfamily III might have been promoted by the continuous reciprocal selective effects of herbivore attack and plant defense. Phylogenetic analysis, conserved domain identification, gene duplication analysis, and chromosomal distribution of PLCPs, overview Carica papaya
3.4.22.2 metabolism papain-like cysteine proteases (PLCPs), a large group of cysteine proteases structurally related to papain, play important roles in plant development, senescence, and defense responses Carica papaya
3.4.22.6 evolution all four major papain-like cysteine proteases (PLCPs) purified from papaya latex, including papain, chymopapain, glycyl endopeptidase and caricain, are grouped into the lineage-specific expansion branch in the subfamily III of papain-like cysteine proteases (PLCPs). Tandem duplications play the dominant role in affecting copy number of PLCPs in plants. Significant variations in size of the PLCP subfamilies among species may reflect genetic adaptation of plant species to different environments. The lineage-specific expansion of papaya PLCPs of subfamily III might have been promoted by the continuous reciprocal selective effects of herbivore attack and plant defense. Phylogenetic analysis, conserved domain identification, gene duplication analysis, and chromosomal distribution of PLCPs, overview Carica papaya
3.4.22.6 metabolism papain-like cysteine proteases (PLCPs), a large group of cysteine proteases structurally related to papain, play important roles in plant development, senescence, and defense responses Carica papaya
3.4.22.25 evolution all four major papain-like cysteine proteases (PLCPs) purified from papaya latex, including papain, chymopapain, glycyl endopeptidase and caricain, are grouped into the lineage-specific expansion branch in the subfamily III of papain-like cysteine proteases (PLCPs). Tandem duplications play the dominant role in affecting copy number of PLCPs in plants. Significant variations in size of the PLCP subfamilies among species may reflect genetic adaptation of plant species to different environments. The lineage-specific expansion of papaya PLCPs of subfamily III might have been promoted by the continuous reciprocal selective effects of herbivore attack and plant defense. Phylogenetic analysis, conserved domain identification, gene duplication analysis, and chromosomal distribution of PLCPs, overview Carica papaya
3.4.22.25 metabolism papain-like cysteine proteases (PLCPs), a large group of cysteine proteases structurally related to papain, play important roles in plant development, senescence, and defense responses Carica papaya
3.4.22.30 evolution all four major papain-like cysteine proteases (PLCPs) purified from papaya latex, including papain, chymopapain, glycyl endopeptidase and caricain, are grouped into the lineage-specific expansion branch in the subfamily III of papain-like cysteine proteases (PLCPs). Tandem duplications play the dominant role in affecting copy number of PLCPs in plants. Significant variations in size of the PLCP subfamilies among species may reflect genetic adaptation of plant species to different environments. The lineage-specific expansion of papaya PLCPs of subfamily III might have been promoted by the continuous reciprocal selective effects of herbivore attack and plant defense. Phylogenetic analysis, conserved domain identification, gene duplication analysis, and chromosomal distribution of PLCPs, overview Carica papaya
3.4.22.30 metabolism papain-like cysteine proteases (PLCPs), a large group of cysteine proteases structurally related to papain, play important roles in plant development, senescence, and defense responses Carica papaya