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Literature summary extracted from

  • de Ory, A.; Nagler, K.; Carrasco, B.; Raguse, M.; Zafra, O.; Moeller, R.; de Vega, M.
    Identification of a conserved 5'-dRP lyase activity in bacterial DNA repair ligase D and its potential role in base excision repair (2016), Nucleic Acids Res., 44, 1833-1844 .
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
6.5.1.1 expressed in Escherichia coli BL21(DE3) cells Bacillus subtilis
6.5.1.1 expressed in Escherichia coli BL21(DE3) cells Pseudomonas aeruginosa

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
6.5.1.1 ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)m Bacillus subtilis
-
(deoxyribonucleotide)n+m + AMP + diphosphate
-
?
6.5.1.1 ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)m Pseudomonas aeruginosa
-
(deoxyribonucleotide)n+m + AMP + diphosphate
-
?
6.5.1.1 ATP + [DNA ligase]-L-lysine Bacillus subtilis
-
[DNA ligase]-N6-(5'-adenylyl)-L-lysine + diphosphate
-
?
6.5.1.1 ATP + [DNA ligase]-L-lysine Pseudomonas aeruginosa
-
[DNA ligase]-N6-(5'-adenylyl)-L-lysine + diphosphate
-
?

Organism

EC Number Organism UniProt Comment Textmining
6.5.1.1 Bacillus subtilis
-
-
-
6.5.1.1 Pseudomonas aeruginosa
-
-
-

Purification (Commentary)

EC Number Purification (Comment) Organism
6.5.1.1 Ni-NTA column chromatography Bacillus subtilis
6.5.1.1 Ni-NTA column chromatography Pseudomonas aeruginosa

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
6.5.1.1 ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)m
-
Bacillus subtilis (deoxyribonucleotide)n+m + AMP + diphosphate
-
?
6.5.1.1 ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)m
-
Pseudomonas aeruginosa (deoxyribonucleotide)n+m + AMP + diphosphate
-
?
6.5.1.1 ATP + [DNA ligase]-L-lysine
-
Bacillus subtilis [DNA ligase]-N6-(5'-adenylyl)-L-lysine + diphosphate
-
?
6.5.1.1 ATP + [DNA ligase]-L-lysine
-
Pseudomonas aeruginosa [DNA ligase]-N6-(5'-adenylyl)-L-lysine + diphosphate
-
?
6.5.1.1 additional information the enzyme also has an intrinsic 5'-2-deoxyribose-5-phosphate lyase activity located at the N-terminal ligase domain that in coordination with the polymerization and ligase activities allows efficient repairing of 2'-deoxyuridine-containing DNA in an in vitro reconstituted base excision repair reaction Bacillus subtilis ?
-
?
6.5.1.1 additional information the enzyme also has an intrinsic 5'-2-deoxyribose-5-phosphate lyase activity located at the N-terminal ligase domain that in coordination with the polymerization and ligase activities allows efficient repairing of 2'-deoxyuridine-containing DNA in an in vitro reconstituted base excision repair reaction Pseudomonas aeruginosa ?
-
?

Synonyms

EC Number Synonyms Comment Organism
6.5.1.1 ATP-dependent DNA ligase
-
Bacillus subtilis
6.5.1.1 ATP-dependent DNA ligase
-
Pseudomonas aeruginosa
6.5.1.1 DNA repair ligase D
-
Bacillus subtilis
6.5.1.1 DNA repair ligase D
-
Pseudomonas aeruginosa
6.5.1.1 LigD
-
Bacillus subtilis
6.5.1.1 LigD
-
Pseudomonas aeruginosa