EC Number | Cloned (Comment) | Organism |
---|---|---|
1.17.1.8 | the dapB open reading frame is cloned in the expression vector pET28a for expression as N-terminal 6x His-tagged protein | Mycobacterium tuberculosis |
4.3.3.7 | the dapA open reading frame is cloned in the expression vector pET28a for expression as N-terminal 6 x His-tagged protein | Mycobacterium tuberculosis |
EC Number | Crystallization (Comment) | Organism |
---|---|---|
4.3.3.7 | micro-batch method and hanging drop vapour diffusion methods of crystallization | Mycobacterium tuberculosis |
EC Number | Inhibitors | Comment | Organism | Structure |
---|---|---|---|---|
4.3.3.7 | 2-(4-carbamoylphenyl)-2-oxoacetic acid | maximal inhibition of 15% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 2-hydroxyheptanediamide | maximal inhibition of 21% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 2-hydroxyheptanedioic acid | maximal inhibition of 74% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 2-oxohexanedioic acid | maximal inhibition of 40% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 2-oxopentanedioic acid | maximal inhibition of 15% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 2-oxopimelate | maximal inhibition of 88% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase. This assay is able to measure DapA enzyme kinetics if the dihydrodipicolinate reductase DapB is present in excess, because under these conditions DapA becomes rate limiting | Mycobacterium tuberculosis | |
4.3.3.7 | 2-phenoxyacetic acid | maximal inhibition of 4% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-((2-amino-2-oxoethyl)sulfonyl) butanoic acid | maximal inhibition of 29% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-((2-amino-2-oxoethyl)thio)butanoic acid | maximal inhibition of 15% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-(2,4,5-trioxoimidazolidin-1-yl)butanoic acid | maximal inhibition of 21% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-amino benzoic acid | maximal inhibition of 8% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-amino-2-hydroxybenzoic acid | maximal inhibition of 4% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-[amino(oxo)acetyl]benzoic acid | maximal inhibition of 34% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-[carboxy(hydroxy)methyl]benzoic acid | maximal inhibition of 35% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 4-[methyl(oxalo)amino]butanoic acid | maximal inhibition of 39% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 5-(carbamoylamino)-5-oxopentanoic acid | maximal inhibition of 40% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 5-(carbamoylthio)pentanoic acid | maximal inhibition of 65% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 5-butylpyridine-2-carboxylic acid | maximal inhibition of 5% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | 7-ethoxy-6,7-dioxoheptanoic acid | maximal inhibition of 35% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | benzoic acid | maximal inhibition of 2% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | carboxycarbonyl-benzoic acid | maximal inhibition of 22% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | ethyl 4-((2-amino-2-oxoethyl)sulfinyl)butanoate | maximal inhibition of 31% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | ethyl 4-((2-amino-2-oxoethyl)sulfonyl)butanoate | maximal inhibition of 12% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | ethyl 4-((2-amino-2-oxoethyl)thio)butanoate | maximal inhibition of 21% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | ethyl 5-(carbamoylsulfanyl)pentanoate | maximal inhibition of 34% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | ethyl [(4-amino-4-oxobutyl)(methyl)amino](oxo)acetate | maximal inhibition of 35% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | heptanedioic acid | maximal inhibition of 10% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | hydroxy[4-(methoxycarbonyl)phenyl]acetic acid | maximal inhibition of 35% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methoxycarbonyl-phenyloxoacetic acid | maximal inhibition of 29% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 3-oxohexanoate | maximal inhibition of 5% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 4-(2,4,5-trioxoimidazolidin-1-yl)butanoate | maximal inhibition of 38% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 4-[(2-ethoxy-2-oxoethyl)(methyl)amino]butanoate | maximal inhibition of 42% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 4-[amino(oxo)acetyl]benzoate | maximal inhibition of 35% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 5-(carbamoylamino)-5-oxopentanoate | maximal inhibition of 65% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 6-oxo-6-(2H-tetrazol-5-yl)hexanoate | maximal inhibition of 35% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 7-amino-6,7-dioxoheptanoate | maximal inhibition of 24% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | methyl 7-amino-6-hydroxy-7-oxoheptanoate | maximal inhibition of 28% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | additional information | molecular descriptors analysis shows that ligands with polar surface area of 91.7 A are likely inhibitors | Mycobacterium tuberculosis | |
4.3.3.7 | N1-(4-amino-4-oxobutyl)-N1-methylethanediamide | maximal inhibition of 40% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis | |
4.3.3.7 | [(4-amino-4-oxobutyl)(methyl)amino](oxo)acetic acid | maximal inhibition of 44% (highest inhibition achieved relative to that in absence of inhibitor by varying the concentration of the inhibitor at a given concentration of other substrates pyruvate 0.5 mM and 0.4 mM L-aspartate-4-semialdehyde), in a coupled assay with recombinant dihydrodipicolinate reductase | Mycobacterium tuberculosis |
EC Number | Organism | UniProt | Comment | Textmining |
---|---|---|---|---|
1.17.1.8 | Mycobacterium tuberculosis | P9WP23 | - |
- |
1.17.1.8 | Mycobacterium tuberculosis H37Rv | P9WP23 | - |
- |
4.3.3.7 | Mycobacterium tuberculosis | P9WP25 | - |
- |
4.3.3.7 | Mycobacterium tuberculosis H37Rv | P9WP25 | - |
- |
EC Number | Purification (Comment) | Organism |
---|---|---|
4.3.3.7 | - |
Mycobacterium tuberculosis |
EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
1.17.1.8 | (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NADPH + H+ | - |
Mycobacterium tuberculosis | (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NADP+ + H2O | - |
? | |
1.17.1.8 | (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NADPH + H+ | - |
Mycobacterium tuberculosis H37Rv | (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NADP+ + H2O | - |
? | |
4.3.3.7 | pyruvate + L-aspartate-4-semialdehyde | - |
Mycobacterium tuberculosis | (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O | - |
? | |
4.3.3.7 | pyruvate + L-aspartate-4-semialdehyde | - |
Mycobacterium tuberculosis H37Rv | (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O | - |
? |
EC Number | Synonyms | Comment | Organism |
---|---|---|---|
1.17.1.8 | DapB | - |
Mycobacterium tuberculosis |
4.3.3.7 | DapA | - |
Mycobacterium tuberculosis |
EC Number | Ki Value [mM] | Ki Value maximum [mM] | Inhibitor | Comment | Organism | Structure |
---|---|---|---|---|---|---|
4.3.3.7 | 0.021 | - |
2-oxopimelate | pH 7.4, 37°C | Mycobacterium tuberculosis |
EC Number | IC50 Value | IC50 Value Maximum | Comment | Organism | Inhibitor | Structure |
---|---|---|---|---|---|---|
4.3.3.7 | 0.0325 | - |
pH 7.4, 37°C | Mycobacterium tuberculosis | 2-oxopimelate |