EC Number | Cloned (Comment) | Organism |
---|---|---|
6.3.1.19 | recombinant expression of His6-tagged enzyme in Escherichia coli strain ER2566 | Corynebacterium glutamicum |
EC Number | Protein Variants | Comment | Organism |
---|---|---|---|
6.3.1.19 | A196S | site-directed mutagenesis, the mutant shows increased pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | D208A | site-directed mutagenesis, the mutant shows reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | D64N | site-directed mutagenesis, a catalytically inactive mutant | Corynebacterium glutamicum |
6.3.1.19 | E209A | site-directed mutagenesis, the mutant shows highly reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | E70A | site-directed mutagenesis, a catalytically inactive mutant | Corynebacterium glutamicum |
6.3.1.19 | N205A | site-directed mutagenesis, the mutant shows reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | R199A | site-directed mutagenesis, the mutant shows highly reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | R201A | site-directed mutagenesis, pupylation catalytically inactive mutant | Corynebacterium glutamicum |
6.3.1.19 | R207A | site-directed mutagenesis, the mutant shows highly reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | R207A | site-directed mutagenesis, whereas extensive protein pupylation occurs with the wild-type enzyme, the R207A mutant catalyzes protein pupylation much more slowly. PafA residue R207 stabilizes the interaction of the enzyme with PanB, the R207A mutant amidates PupE and the wild-type variant | Corynebacterium glutamicum |
6.3.1.19 | T197A | site-directed mutagenesis, the mutant shows reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | T198A | site-directed mutagenesis, the mutant shows highly reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
6.3.1.19 | V65S | site-directed mutagenesis, the mutant shows reduced pupylation activity with substrate PanB compared to wild-type | Corynebacterium glutamicum |
EC Number | KM Value [mM] | KM Value Maximum [mM] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|---|
6.3.1.19 | additional information | - |
additional information | Michaelis-Menten kinetic analysis of poly-pupylation, overview | Corynebacterium glutamicum | |
6.3.1.19 | 0.084 | - |
[PanB]-L-lysine | pH 7.5, 30°C, recombinant His-tagged enzyme | Corynebacterium glutamicum |
EC Number | Metals/Ions | Comment | Organism | Structure |
---|---|---|---|---|
6.3.1.19 | Mg2+ | required | Corynebacterium glutamicum |
EC Number | Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine | Corynebacterium glutamicum | - |
ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine | - |
? | |
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine | Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 | - |
ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine | - |
? |
EC Number | Organism | UniProt | Comment | Textmining |
---|---|---|---|---|
6.3.1.19 | Corynebacterium glutamicum | Q8NQE1 | - |
- |
6.3.1.19 | Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 | Q8NQE1 | - |
- |
EC Number | Purification (Comment) | Organism |
---|---|---|
6.3.1.19 | recombinant His6-tagged enzyme from Escherichia coli strain ER2566 by nickel affinity chormatography | Corynebacterium glutamicum |
EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [PanB]-L-lysine | Mycobacterium tuberculosis PanB is a model substrate of PafA, in silico docking analysis reveals interaction via PafA residue arginine 207 | Corynebacterium glutamicum | ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[PanB]-L-lysine | - |
? | |
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [PanB]-L-lysine | Mycobacterium tuberculosis PanB is a model substrate of PafA, in silico docking analysis reveals interaction via PafA residue arginine 207 | Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 | ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[PanB]-L-lysine | - |
? | |
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine | - |
Corynebacterium glutamicum | ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine | - |
? | |
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine | the Mycobacterium smegmatis Pup variant used presents a glutamate at its C-terminus (PupE) and, as such, can be readily conjugated to target proteins by PafA | Corynebacterium glutamicum | ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine | - |
? | |
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine | - |
Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 | ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine | - |
? | |
6.3.1.19 | ATP + [prokaryotic ubiquitin-like protein]-L-glutamate + [protein]-L-lysine | the Mycobacterium smegmatis Pup variant used presents a glutamate at its C-terminus (PupE) and, as such, can be readily conjugated to target proteins by PafA | Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 | ADP + phosphate + N6-([prokaryotic ubiquitin-like protein]-gamma-L-glutamyl)-[protein]-L-lysine | - |
? | |
6.3.1.19 | additional information | PafA substrate docking study, overview. PafA can use ammoniumions as targets for pupylation. The reaction catalyzed is in fact the conversion of PupE C-terminal glutamate into a glutamine, that is, PupE amidation. The docking of a small molecule like ammonium in the PafA active site cannot be supported by auxiliary interactions. PafA residue R207 stabilizes the interaction of the enzyme with PanB, the R207A mutant amidates PupE and the wild-type variant | Corynebacterium glutamicum | ? | - |
? | |
6.3.1.19 | additional information | PafA substrate docking study, overview. PafA can use ammoniumions as targets for pupylation. The reaction catalyzed is in fact the conversion of PupE C-terminal glutamate into a glutamine, that is, PupE amidation. The docking of a small molecule like ammonium in the PafA active site cannot be supported by auxiliary interactions. PafA residue R207 stabilizes the interaction of the enzyme with PanB, the R207A mutant amidates PupE and the wild-type variant | Corynebacterium glutamicum ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025 | ? | - |
? |
EC Number | Synonyms | Comment | Organism |
---|---|---|---|
6.3.1.19 | PafA | - |
Corynebacterium glutamicum |
6.3.1.19 | Pup ligase | - |
Corynebacterium glutamicum |
EC Number | Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
---|---|---|---|---|
6.3.1.19 | 30 | - |
assay at | Corynebacterium glutamicum |
EC Number | pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
---|---|---|---|---|
6.3.1.19 | 7.5 | - |
assay at | Corynebacterium glutamicum |
EC Number | Cofactor | Comment | Organism | Structure |
---|---|---|---|---|
6.3.1.19 | ATP | - |
Corynebacterium glutamicum |
EC Number | General Information | Comment | Organism |
---|---|---|---|
6.3.1.19 | physiological function | pupylation, the bacterial equivalent of ubiquitylation, involves the conjugation of a prokaryotic ubiquitin-like protein (Pup) to protein targets. In contrast to the ubiquitin system, where many ubiquitin ligases exist, a single bacterial ligase, PafA, catalyzes the conjugation of Pup to a wide array of protein targets | Corynebacterium glutamicum |