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Computational analysis of tuberization protein linoleate 9S-lipoxygenase 3 from Solanum tuberosum

Rameshwari, R.; Madhu, S.; Prasad, V.; Chapadgaonkar, S.; Int. J. ChemTech Res. 8, 294-310 (2015)
No PubMed abstract available

Data extracted from this reference:

Cloned(Commentary)
EC Number
Commentary
Organism
1.13.11.58
gene LOX1.3, DNA and amino acid sequence determination and analysis, sequence comparisons, phylogenetic analysis
Solanum tuberosum
Engineering
EC Number
Amino acid exchange
Commentary
Organism
1.13.11.58
additional information
expression of antisense coding sequence of a specific tuber LOX, the suppression mutant POTLX-1 exhibits a significant reduction in LOX activity in stolons and tubers
Solanum tuberosum
Metals/Ions
EC Number
Metals/Ions
Commentary
Organism
Structure
1.13.11.58
Fe2+
1 metal ion per subunit
Solanum tuberosum
Natural Substrates/ Products (Substrates)
EC Number
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
1.13.11.58
alpha-linolenic acid + O2
Solanum tuberosum
-
(10E,12Z)-9-hydroperoxy-10,12,15-octadecaterieonoic acid
-
-
?
Organism
EC Number
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
1.13.11.58
Solanum tuberosum
Q43189
-
-
Source Tissue
EC Number
Source Tissue
Commentary
Organism
Textmining
1.13.11.58
additional information
accumulation of LOX 1 class transcript is restricted to developing tubers, stolons, and roots correlating mRNA accumulation positively with tuber initiation and growth
Solanum tuberosum
-
1.13.11.58
root
-
Solanum tuberosum
-
1.13.11.58
tuber
-
Solanum tuberosum
-
Substrates and Products (Substrate)
EC Number
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
1.13.11.58
alpha-linolenic acid + O2
-
742693
Solanum tuberosum
(10E,12Z)-9-hydroperoxy-10,12,15-octadecaterieonoic acid
-
-
-
?
Subunits
EC Number
Subunits
Commentary
Organism
1.13.11.58
More
primary and secondary structure analysis of linoleate 9S-lipoxygenase 3, domain structure, especially the PLAT domain that forms a beta-sandwich composed of two sheets of four strands each, overview
Solanum tuberosum
Cloned(Commentary) (protein specific)
EC Number
Commentary
Organism
1.13.11.58
gene LOX1.3, DNA and amino acid sequence determination and analysis, sequence comparisons, phylogenetic analysis
Solanum tuberosum
Engineering (protein specific)
EC Number
Amino acid exchange
Commentary
Organism
1.13.11.58
additional information
expression of antisense coding sequence of a specific tuber LOX, the suppression mutant POTLX-1 exhibits a significant reduction in LOX activity in stolons and tubers
Solanum tuberosum
Metals/Ions (protein specific)
EC Number
Metals/Ions
Commentary
Organism
Structure
1.13.11.58
Fe2+
1 metal ion per subunit
Solanum tuberosum
Natural Substrates/ Products (Substrates) (protein specific)
EC Number
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
1.13.11.58
alpha-linolenic acid + O2
Solanum tuberosum
-
(10E,12Z)-9-hydroperoxy-10,12,15-octadecaterieonoic acid
-
-
?
Source Tissue (protein specific)
EC Number
Source Tissue
Commentary
Organism
Textmining
1.13.11.58
additional information
accumulation of LOX 1 class transcript is restricted to developing tubers, stolons, and roots correlating mRNA accumulation positively with tuber initiation and growth
Solanum tuberosum
-
1.13.11.58
root
-
Solanum tuberosum
-
1.13.11.58
tuber
-
Solanum tuberosum
-
Substrates and Products (Substrate) (protein specific)
EC Number
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
1.13.11.58
alpha-linolenic acid + O2
-
742693
Solanum tuberosum
(10E,12Z)-9-hydroperoxy-10,12,15-octadecaterieonoic acid
-
-
-
?
Subunits (protein specific)
EC Number
Subunits
Commentary
Organism
1.13.11.58
More
primary and secondary structure analysis of linoleate 9S-lipoxygenase 3, domain structure, especially the PLAT domain that forms a beta-sandwich composed of two sheets of four strands each, overview
Solanum tuberosum
General Information
EC Number
General Information
Commentary
Organism
1.13.11.58
evolution
analysis of functional domains, families and motifs along with the phylogenetic analysis
Solanum tuberosum
1.13.11.58
metabolism
the enzyme takes part in the LOX pathway, overview
Solanum tuberosum
1.13.11.58
physiological function
the tuberization protein linoleate 9S-lipoxygenase 3 is not the only gene responsible for tuberization in potato. Tuber formation process regulation, overview
Solanum tuberosum
General Information (protein specific)
EC Number
General Information
Commentary
Organism
1.13.11.58
evolution
analysis of functional domains, families and motifs along with the phylogenetic analysis
Solanum tuberosum
1.13.11.58
metabolism
the enzyme takes part in the LOX pathway, overview
Solanum tuberosum
1.13.11.58
physiological function
the tuberization protein linoleate 9S-lipoxygenase 3 is not the only gene responsible for tuberization in potato. Tuber formation process regulation, overview
Solanum tuberosum