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Literature summary extracted from

  • Faraji, S.; Groenhof, G.; Dreuw, A.
    Combined QM/MM investigation on the light-driven electron-induced repair of the (6-4) thymine dimer catalyzed by DNA photolyase (2013), J. Phys. Chem. B, 117, 10071-10079.
    View publication on PubMed

Organism

EC Number Organism UniProt Comment Textmining
4.1.99.13 Drosophila melanogaster
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Reaction

EC Number Reaction Comment Organism Reaction ID
4.1.99.13 (6-4) photoproduct (in DNA) = 2 pyrimidine residues (in DNA) repair photocycle of (6-4) thymine photoproduct by (6-4) photolyase, which involves light absorption by the 8-HDF cofactor and transfer of the excitation energy to the FADH-. Intermolecular Coulombic decay resulting in an electron transfer from FADH? to the dimer initiating the splitting process, mechanism, detailed overview. The mechanism requires the C5-OH transfer from C5 of the 5' thymine to the C4' of the 3' thymine followed by H transfer to the N3' of the 3' thymine. Of two conserved histidine residues, only His365 is protonated Drosophila melanogaster

Synonyms

EC Number Synonyms Comment Organism
4.1.99.13 (6-4) photolyase
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Drosophila melanogaster

General Information

EC Number General Information Comment Organism
4.1.99.13 additional information quantum mechanical/molecular mechanics simulations using X-ray structure of the enzyme-DNA complex, overview Drosophila melanogaster