EC Number | Cloned (Comment) | Organism |
---|---|---|
1.1.3.12 | gene mll6785, expression of C-terminally His6-tagged wild-type and mutant enzymes in Escherichia coli strain JM109 | Mesorhizobium loti |
EC Number | Crystallization (Comment) | Organism |
---|---|---|
1.1.3.12 | purified recombinant C-terminally His6-tagged PNOX and PNOX-pyridoxamine complex, sitting drop vapour diffusion mthod and micro-seeding method, mixing of 0.002 ml of 10 mg/ml PNOX with 0.002 ml of a precipitant solution comtaining 0.1 M HEPES-NaOH, pH 7.5, 10% v/v 2-propanol, and 20% w/v PEG 4000, equilibration against 01 ml of precipitant solution, 4°C, primary crystals are crushed and suspended in 0.5 ml of a solution consisting of equal volumes of a crystallization buffer containing 50 mM Tris-HCl, pH 8.0, 10% w/v glycerol, 0.005 mM FAD, 0.1% v/v 2-mercaptoethanol, and 0.01% v/v Tween 20, and precipitant solution as seeding solution, or seeding crystals are prepared by vapor diffusion in a mixture consisting of 0.002 ml of 13 mg/ml PNOX, and 0.002 ml of the precipitant solution comprising 0.1 M HEPES-NaOH, pH 7.5, 25% v/v 2-propanol, 20% w/v PEG 4000, and 10 mM pyridoxamine, 3 weeks, X-ray diffraction structuure determination and analysis at 2.2 A and 2.1 A resolutions, respectively, molecular replacement | Mesorhizobium loti |
EC Number | Protein Variants | Comment | Organism |
---|---|---|---|
1.1.3.12 | H460A | site-directed mutagenesis, the mutant shows highly reduced activity compared to the wild-type enzyme | Mesorhizobium loti |
1.1.3.12 | H460A/H462A | site-directed mutagenesis, inactive mutant | Mesorhizobium loti |
1.1.3.12 | H462A | site-directed mutagenesis, the mutant shows highly reduced activity compared to the wild-type enzyme | Mesorhizobium loti |
EC Number | KM Value [mM] | KM Value Maximum [mM] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|---|
1.1.3.12 | 0.0153 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged wild-type enzyme | Mesorhizobium loti | |
1.1.3.12 | 0.0687 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged mutant H460A | Mesorhizobium loti | |
1.1.3.12 | 0.0876 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged mutant H462A | Mesorhizobium loti |
EC Number | Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
1.1.3.12 | pyridoxine + O2 | Mesorhizobium loti | - |
pyridoxal + H2O2 | - |
? |
EC Number | Organism | UniProt | Comment | Textmining |
---|---|---|---|---|
1.1.3.12 | Mesorhizobium loti | Q5NT46 | gene mll6785 | - |
EC Number | Purification (Comment) | Organism |
---|---|---|
1.1.3.12 | recombinant C-terminally His6-tagged wild-type and mutant enzymes from Escherichia coli strain JM109 | Mesorhizobium loti |
EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
1.1.3.12 | pyridoxine + O2 | - |
Mesorhizobium loti | pyridoxal + H2O2 | - |
? |
EC Number | Subunits | Comment | Organism |
---|---|---|---|
1.1.3.12 | monomer | - |
Mesorhizobium loti |
EC Number | Synonyms | Comment | Organism |
---|---|---|---|
1.1.3.12 | PNOX | - |
Mesorhizobium loti |
EC Number | Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
---|---|---|---|---|
1.1.3.12 | 30 | - |
assay at | Mesorhizobium loti |
EC Number | Turnover Number Minimum [1/s] | Turnover Number Maximum [1/s] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|---|
1.1.3.12 | 0.4 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged mutant H460A | Mesorhizobium loti | |
1.1.3.12 | 1.3 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged mutant H462A | Mesorhizobium loti | |
1.1.3.12 | 19.9 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged wild-type enzyme | Mesorhizobium loti |
EC Number | pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
---|---|---|---|---|
1.1.3.12 | 8 | - |
assay at | Mesorhizobium loti |
EC Number | Cofactor | Comment | Organism | Structure |
---|---|---|---|---|
1.1.3.12 | FAD | dependent on | Mesorhizobium loti |
EC Number | General Information | Comment | Organism |
---|---|---|---|
1.1.3.12 | evolution | the enzyme belongs to the glucose methanol choline (GMC) oxidoreductase family of enzymes. Active site Pro504 in PNOX corresponds to Asn or His of the conserved His-Asn or His-His pair in other GMC oxidoreductase active sites | Mesorhizobium loti |
1.1.3.12 | metabolism | first enzyme in pathway I for the degradation of pyridoxine | Mesorhizobium loti |
1.1.3.12 | additional information | in the active site, His460, His462, and Pro504 are located on the re-face of the isoalloxazine ring of FAD, pyridoxamine binds to the active site through several hydrogen bonds, mode, overview. His462 may act as a general base for the abstraction of a proton from the 4'-hydroxyl of pyridoxine. His460 may play a role in the binding and positioning of pyridoxine | Mesorhizobium loti |
EC Number | kcat/KM Value [1/mMs-1] | kcat/KM Value Maximum [1/mMs-1] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|---|
1.1.3.12 | 6 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged mutant H460A | Mesorhizobium loti | |
1.1.3.12 | 15 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged mutant H462A | Mesorhizobium loti | |
1.1.3.12 | 1300 | - |
pyridoxine | pH 8.0, 30°C, recombinant His6-tagged wild-type enzyme | Mesorhizobium loti |