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Literature summary extracted from

  • Michailidis, G.; Argiriou, A.; Darzentas, N.; Tsaftaris, A.
    Analysis of xyloglucan endotransglycosylase/hydrolase (XTH) genes from allotetraploid (Gossypium hirsutum) cotton and its diploid progenitors expressed during fiber elongation (2009), J. Plant Physiol., 166, 403-416.
    View publication on PubMed

Cloned(Commentary)

EC Number Cloned (Comment) Organism
3.2.1.151 XTH-DNA from leaves in pCR 2.1-TOPO vector Gossypium barbadense
3.2.1.151 XTH-DNA from leaves in pCR 2.1-TOPO vector Gossypium hirsutum
3.2.1.151 XTH-DNA from leaves in pCR 2.1-TOPO vector Gossypium arboreum
3.2.1.151 XTH-DNA from leaves in pCR 2.1-TOPO vector Gossypium raimondii
3.2.1.151 XTH-DNA from leaves in pCR 2.1-TOPO vector, rolling circle amplification RACE Gossypium hirsutum

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
3.2.1.151 cell wall
-
 Gossypium barbadense 5618
-
3.2.1.151 cell wall
-
 Gossypium hirsutum 5618
-
3.2.1.151 cell wall
-
 Gossypium arboreum 5618
-
3.2.1.151 cell wall
-
 Gossypium raimondii 5618
-

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
3.2.1.151 additional information Gossypium barbadense role in initiation and elongation of cotton fiber development ?
-
 ?
3.2.1.151 additional information Gossypium hirsutum role in initiation and elongation of cotton fiber development ?
-
 ?
3.2.1.151 additional information Gossypium arboreum role in initiation and elongation of cotton fiber development ?
-
 ?
3.2.1.151 additional information Gossypium raimondii role in initiation and elongation of cotton fiber development ?
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
2.4.1.207 Gossypium arboreum
-
 variant 79/BH47
-
2.4.1.207 Gossypium hirsutum Q7Y252 cultivars Acala SJ2, Palmeri, 138F, and PI529989
-
2.4.1.207 Gossypium raimondii
-
 variant Ulbrich
-
3.2.1.151 Gossypium arboreum B7SCZ6 289 amino acids, GaXTH1, similar to Gossypium hirsutum XTH1-2 gene sequence; var. 79/BH47, diploploid progenitor of Gossypium hirsutum, tree cotton
-
3.2.1.151 Gossypium barbadense
-
 Giza7 (long fibers, 1.8fold higher XTH expression than in Gossypium hirsutum Acala SJ2), sea-island cotton/Egyptian cotton
-
3.2.1.151 Gossypium hirsutum B2KL33 289 amino acids, 1122 bp, GhXTH1-1 similar to Gossypium raimondii genomic sequence, expressed in Gossypium hirsutum fibers, during early stages of fiber elongation of cotton fibers gene and expression levels vary among cultivars differing in fiber percentage and fiber length; Acala SJ2 (38% fibers), Palmeri (20% fiber), 138F (60% fibers, 2.8fold higher XTH-expression than in Acala SJ2), and PI529989 (71% fiber), allotetraploid cotton from progenitors Gossypium raimondii and Gossypium arboreum, upland cotton
-
3.2.1.151 Gossypium hirsutum B2KL34 289 amino acids, 1122 bp, GhXTH1-2 similar to Gossypium arboreum genomic sequence, sequenced but not expressed in Gossypium hirsutum fibers; Acala SJ2 (38% fibers), Palmeri (20% fiber), 138F (60% fibers, 2.8fold higher XTH-expression than in Acala SJ2), and PI529989 (71% fiber), allotetraploid cotton from progenitors Gossypium raimondii and Gossypium arboreum, upland cotton
-
3.2.1.151 Gossypium hirsutum Q7Y252 289 amino acids, 1268 bp full length XTH cDNA of Gossypium hirsutum, amino acid sequence identical to earlier deposited full length cotton XTH cDNA coding region but 5' and 3' regions differ; Acala SJ2 (38% fibers), Palmeri (20% fiber), 138F (60% fibers, 2.8fold higher XTH-expression than in Acala SJ2), and PI529989 (71% fiber), allotetraploid cotton from progenitors Gossypium raimondii and Gossypium arboreum, upland cotton
-
3.2.1.151 Gossypium raimondii B7SCZ7 289 amino acids, GrXTH1, similar to Gossypium hirsutum gene sequence GhXTH1-1; var. Ulbrich, diploploid progenitor of Gossypium hirsutum, New World cotton
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
2.4.1.207 leaf
-
 Gossypium arboreum
-
2.4.1.207 leaf
-
 Gossypium hirsutum
-
2.4.1.207 leaf
-
 Gossypium raimondii
-
3.2.1.151 fiber no transcripts found in leaves, petals, sepals, and cotyledons Gossypium hirsutum
-
3.2.1.151 fiber no transcripts found in leaves, petals, sepals, and cotyledons Gossypium arboreum
-
3.2.1.151 fiber no transcripts found in leaves, petals, sepals, and cotyledons Gossypium raimondii
-
3.2.1.151 fiber no XTH transcripts found in leaves, petals, sepals, and cotyledons Gossypium barbadense
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
2.4.1.207 donor xyloglucan + acceptor xyloglucan
-
 Gossypium arboreum ?
-
 ?
2.4.1.207 donor xyloglucan + acceptor xyloglucan
-
 Gossypium hirsutum ?
-
 ?
2.4.1.207 donor xyloglucan + acceptor xyloglucan
-
 Gossypium raimondii ?
-
 ?
3.2.1.151 additional information role in initiation and elongation of cotton fiber development Gossypium barbadense ?
-
 ?
3.2.1.151 additional information role in initiation and elongation of cotton fiber development Gossypium hirsutum ?
-
 ?
3.2.1.151 additional information role in initiation and elongation of cotton fiber development Gossypium arboreum ?
-
 ?
3.2.1.151 additional information role in initiation and elongation of cotton fiber development Gossypium raimondii ?
-
 ?

Synonyms

EC Number Synonyms Comment Organism
2.4.1.207 XET
-
 Gossypium arboreum
2.4.1.207 XET
-
 Gossypium hirsutum
2.4.1.207 XET
-
 Gossypium raimondii
2.4.1.207 XTH1 isozyme Gossypium arboreum
2.4.1.207 XTH1 isozyme Gossypium hirsutum
2.4.1.207 XTH1 isozyme Gossypium raimondii
2.4.1.207 xyloglucan endotransglycosylase
-
 Gossypium arboreum
2.4.1.207 xyloglucan endotransglycosylase
-
 Gossypium hirsutum
2.4.1.207 xyloglucan endotransglycosylase
-
 Gossypium raimondii
3.2.1.151 XTH
-
 Gossypium barbadense
3.2.1.151 XTH
-
 Gossypium hirsutum
3.2.1.151 XTH
-
 Gossypium arboreum
3.2.1.151 XTH
-
 Gossypium raimondii
3.2.1.151 xyloglucan endotransglycosylase/hydrolase
-
 Gossypium barbadense
3.2.1.151 xyloglucan endotransglycosylase/hydrolase
-
 Gossypium hirsutum
3.2.1.151 xyloglucan endotransglycosylase/hydrolase
-
 Gossypium arboreum
3.2.1.151 xyloglucan endotransglycosylase/hydrolase
-
 Gossypium raimondii