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Literature summary extracted from

  • Meyer, B.; Kuever, J.
    Homology modeling of dissimilatory APS reductases (AprBA) of sulfur-oxidizing and sulfate-reducing prokaryotes (2008), PLoS ONE, 3, e1514.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

EC Number Cloned (Comment) Organism
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Pyrobaculum aerophilum
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Thermodesulfobacterium commune
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Thermodesulfovibrio yellowstonii
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Allochromatium vinosum
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfovibrio vulgaris
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfovibrio desulfuricans
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfobulbus sp.
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Olavius algarvensis
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Syntrophobacter fumaroxidans
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulforamulus reducens
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Thiobacillus denitrificans
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Caldivirga maquilingensis
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Chlorobaculum tepidum
1.8.99.2 full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Candidatus Pelagibacter ubique

Metals/Ions

EC Number Metals/Ions Comment Organism Structure
1.8.99.2 Iron contains two [4Fe-4S] centers Pyrobaculum aerophilum
1.8.99.2 Iron contains two [4Fe-4S] centers Thermodesulfobacterium commune
1.8.99.2 Iron contains two [4Fe-4S] centers Thermodesulfovibrio yellowstonii
1.8.99.2 Iron contains two [4Fe-4S] centers Desulfotalea psychrophila
1.8.99.2 Iron contains two [4Fe-4S] centers Allochromatium vinosum
1.8.99.2 Iron contains two [4Fe-4S] centers Desulfovibrio vulgaris
1.8.99.2 Iron contains two [4Fe-4S] centers Desulfovibrio desulfuricans
1.8.99.2 Iron contains two [4Fe-4S] centers Desulfobulbus sp.
1.8.99.2 Iron contains two [4Fe-4S] centers Olavius algarvensis
1.8.99.2 Iron contains two [4Fe-4S] centers Syntrophobacter fumaroxidans
1.8.99.2 Iron contains two [4Fe-4S] centers Desulforamulus reducens
1.8.99.2 Iron contains two [4Fe-4S] centers Thiobacillus denitrificans
1.8.99.2 Iron contains two [4Fe-4S] centers Caldivirga maquilingensis
1.8.99.2 Iron contains two [4Fe-4S] centers Chlorobaculum tepidum
1.8.99.2 Iron contains two [4Fe-4S] centers Candidatus Pelagibacter ubique

Organism

EC Number Organism UniProt Comment Textmining
1.8.99.2 Allochromatium vinosum O33996
-
-
1.8.99.2 Caldivirga maquilingensis
-
-
-
1.8.99.2 Candidatus Pelagibacter ubique
-
HTCC1062
-
1.8.99.2 Candidatus Pelagibacter ubique HTCC1062
-
HTCC1062
-
1.8.99.2 Chlorobaculum tepidum Q8KE28
-
-
1.8.99.2 Desulfobulbus sp.
-
-
-
1.8.99.2 Desulfobulbus sp. MLMS-1
-
-
-
1.8.99.2 Desulforamulus reducens
-
-
-
1.8.99.2 Desulforamulus reducens MI-1
-
-
-
1.8.99.2 Desulfotalea psychrophila
-
-
-
1.8.99.2 Desulfovibrio desulfuricans Q9L768 ATCC 29577
-
1.8.99.2 Desulfovibrio vulgaris Q72DT3 str. Hildenborough
-
1.8.99.2 Desulfovibrio vulgaris Hildenborough Q72DT3 str. Hildenborough
-
1.8.99.2 Olavius algarvensis B5QSJ0 Delta1 symbiont
-
1.8.99.2 Pyrobaculum aerophilum
-
-
-
1.8.99.2 Syntrophobacter fumaroxidans A0LH39 beta-subunit
-
1.8.99.2 Thermodesulfobacterium commune
-
-
-
1.8.99.2 Thermodesulfovibrio yellowstonii
-
-
-
1.8.99.2 Thiobacillus denitrificans Q5VLA6 alpha-subunit; ATCC 25259
-
1.8.99.2 Thiobacillus denitrificans Q5VLA7 beta-subunit; ATCC 25259
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Pyrobaculum aerophilum ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Thermodesulfobacterium commune ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Thermodesulfovibrio yellowstonii ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfotalea psychrophila ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Allochromatium vinosum ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfovibrio vulgaris ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfovibrio desulfuricans ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfobulbus sp. ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Olavius algarvensis ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Syntrophobacter fumaroxidans ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulforamulus reducens ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Thiobacillus denitrificans ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Caldivirga maquilingensis ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Chlorobaculum tepidum ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Candidatus Pelagibacter ubique ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Candidatus Pelagibacter ubique HTCC1062 ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulforamulus reducens MI-1 ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfovibrio vulgaris Hildenborough ?
-
?
1.8.99.2 additional information full-length AprBA sequences from 20 phylogenetically distinct sulfate-reducing prokaryotes and sulfuroxidizing bacteria species are used for homology modeling. Based on the comparative models, there are no significant structural differences between dissimilatory APS reductases from sulfate-reducing prokaryotes and sulfur-oxidizing bacteria. This might be indicative for a similar catalytic process of APS reduction/sulfite oxidation Desulfobulbus sp. MLMS-1 ?
-
?

Synonyms

EC Number Synonyms Comment Organism
1.8.99.2 AprBA
-
Pyrobaculum aerophilum
1.8.99.2 AprBA
-
Thermodesulfobacterium commune
1.8.99.2 AprBA
-
Thermodesulfovibrio yellowstonii
1.8.99.2 AprBA
-
Desulfotalea psychrophila
1.8.99.2 AprBA
-
Allochromatium vinosum
1.8.99.2 AprBA
-
Desulfovibrio vulgaris
1.8.99.2 AprBA
-
Desulfovibrio desulfuricans
1.8.99.2 AprBA
-
Desulfobulbus sp.
1.8.99.2 AprBA
-
Olavius algarvensis
1.8.99.2 AprBA
-
Syntrophobacter fumaroxidans
1.8.99.2 AprBA
-
Desulforamulus reducens
1.8.99.2 AprBA
-
Thiobacillus denitrificans
1.8.99.2 AprBA
-
Caldivirga maquilingensis
1.8.99.2 AprBA
-
Chlorobaculum tepidum
1.8.99.2 AprBA
-
Candidatus Pelagibacter ubique
1.8.99.2 dissimilatory APS reductase
-
Pyrobaculum aerophilum
1.8.99.2 dissimilatory APS reductase
-
Thermodesulfobacterium commune
1.8.99.2 dissimilatory APS reductase
-
Thermodesulfovibrio yellowstonii
1.8.99.2 dissimilatory APS reductase
-
Desulfotalea psychrophila
1.8.99.2 dissimilatory APS reductase
-
Allochromatium vinosum
1.8.99.2 dissimilatory APS reductase
-
Desulfovibrio vulgaris
1.8.99.2 dissimilatory APS reductase
-
Desulfovibrio desulfuricans
1.8.99.2 dissimilatory APS reductase
-
Desulfobulbus sp.
1.8.99.2 dissimilatory APS reductase
-
Olavius algarvensis
1.8.99.2 dissimilatory APS reductase
-
Syntrophobacter fumaroxidans
1.8.99.2 dissimilatory APS reductase
-
Desulforamulus reducens
1.8.99.2 dissimilatory APS reductase
-
Thiobacillus denitrificans
1.8.99.2 dissimilatory APS reductase
-
Caldivirga maquilingensis
1.8.99.2 dissimilatory APS reductase
-
Chlorobaculum tepidum
1.8.99.2 dissimilatory APS reductase
-
Candidatus Pelagibacter ubique

Cofactor

EC Number Cofactor Comment Organism Structure
1.8.99.2 FAD
-
Pyrobaculum aerophilum
1.8.99.2 FAD
-
Thermodesulfobacterium commune
1.8.99.2 FAD
-
Thermodesulfovibrio yellowstonii
1.8.99.2 FAD
-
Desulfotalea psychrophila
1.8.99.2 FAD
-
Allochromatium vinosum
1.8.99.2 FAD
-
Desulfovibrio vulgaris
1.8.99.2 FAD
-
Desulfovibrio desulfuricans
1.8.99.2 FAD
-
Desulfobulbus sp.
1.8.99.2 FAD
-
Olavius algarvensis
1.8.99.2 FAD
-
Syntrophobacter fumaroxidans
1.8.99.2 FAD
-
Desulforamulus reducens
1.8.99.2 FAD
-
Thiobacillus denitrificans
1.8.99.2 FAD
-
Caldivirga maquilingensis
1.8.99.2 FAD
-
Chlorobaculum tepidum
1.8.99.2 FAD
-
Candidatus Pelagibacter ubique