Literature summary extracted from
Minagawa, A.; Takaku, H.; Ishii, R.; Takagi, M.; Yokoyama, S.; Nashimoto, M.
Identification by Mn2+ rescue of two residues essential for the proton transfer of tRNase Z catalysis (2006), Nucleic Acids Res., 34, 3811-3818.
Cloned(Commentary)
EC Number |
Cloned (Comment) |
Organism |
---|
3.1.26.11 |
expressed in Escherichia coli, pQE-80L vector used for generation of engineered variants containing a single amino acid substitution, His-tagging |
Thermotoga maritima |
Crystallization (Commentary)
EC Number |
Crystallization (Comment) |
Organism |
---|
3.1.26.11 |
four-layer alpha-beta/beta-alpha sandwich fold determined |
Thermotoga maritima |
Protein Variants
EC Number |
Protein Variants |
Comment |
Organism |
---|
3.1.26.11 |
D190A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
D25A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
D52A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
F11P |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
H134A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
H222A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
H244A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
H48A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
H50A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
3.1.26.11 |
H53A |
in vitro 3'-processing in the presence of 10mM Mg2+ or 0.2 mM Mn2+ |
Thermotoga maritima |
Metals/Ions
EC Number |
Metals/Ions |
Comment |
Organism |
Structure |
---|
3.1.26.11 |
Co2+ |
0.2 mM, no rescue of lost tRNase Z activity observed |
Thermotoga maritima |
|
3.1.26.11 |
Cu2+ |
0.2 mM, no rescue of lost tRNase Z activity observed |
Thermotoga maritima |
|
3.1.26.11 |
Mg2+ |
10 mM, reaction kinetics indicated, cleavage by each variant in the presence of Mg2+ hardly detected, binding to pre-tRNA observed, essential for activity |
Thermotoga maritima |
|
3.1.26.11 |
Mn2+ |
0.2 mM, reaction kinetics indicated, essential for activity, Mn2+ ions restore a lost Mg2+ dependent activity with two exceptions of the Asp52Ala and His222Ala substitutions |
Thermotoga maritima |
|
3.1.26.11 |
Zn2+ |
0.2 mM, no rescue of lost tRNase Z activity observed |
Thermotoga maritima |
|
Organism
EC Number |
Organism |
UniProt |
Comment |
Textmining |
---|
3.1.26.11 |
Thermotoga maritima |
- |
- |
- |
Purification (Commentary)
EC Number |
Purification (Comment) |
Organism |
---|
3.1.26.11 |
gel filtration |
Thermotoga maritima |
Specific Activity [micromol/min/mg]
EC Number |
Specific Activity Minimum [µmol/min/mg] |
Specific Activity Maximum [µmol/min/mg] |
Comment |
Organism |
---|
3.1.26.11 |
additional information |
- |
reaction kinetics for in vitro 3'-processing of pre-tRNAArg(74CCA76) and pre-tRNAArg(74GUG76) in the presence of 10mM Mg2+ or 0.2 mM Mn2+ shown |
Thermotoga maritima |
Substrates and Products (Substrate)
EC Number |
Substrates |
Comment Substrates |
Organism |
Products |
Comment (Products) |
Rev. |
Reac. |
---|
3.1.26.11 |
pre-tRNAArg(74CCA76) + H2O |
reaction kinetics for in vitro 3'-processing using engineered enzyme variants, in presence of 10 mM Mg2+ or of 0.2 mM Mn2+ |
Thermotoga maritima |
? |
- |
? |
|
3.1.26.11 |
pre-tRNAArg(74GUG76) + H2O |
cleavage of pre-tRNAArg(74GUG76) by engineered variants about 7 to more than 16fold less efficient than that of pre-tRNAArg(74CCA76) |
Thermotoga maritima |
? |
- |
? |
|
Synonyms
EC Number |
Synonyms |
Comment |
Organism |
---|
3.1.26.11 |
tRNase Z |
- |
Thermotoga maritima |
Temperature Optimum [°C]
EC Number |
Temperature Optimum [°C] |
Temperature Optimum Maximum [°C] |
Comment |
Organism |
---|
3.1.26.11 |
60 |
- |
assay at |
Thermotoga maritima |