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Literature summary extracted from
- Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover (2004), Prog. Nucleic Acid Res. Mol. Biol., 78, 305-337.
Localization
| EC Number | Localization | Comment | Organism | GeneOntology No. | Textmining |
|---|---|---|---|---|---|
| 3.1.13.1 | chloroplast | - |
Embryophyta | 9507 | - |
| 3.1.13.1 | cytoplasm | - |
Homo sapiens | 5737 | - |
| 3.1.13.1 | mitochondrion | - |
Homo sapiens | 5739 | - |
| 3.1.13.1 | mitochondrion | - |
Saccharomyces cerevisiae | 5739 | - |
| 3.1.13.1 | mitochondrion | - |
Embryophyta | 5739 | - |
| 3.1.13.1 | nucleus | - |
Homo sapiens | 5634 | - |
Metals/Ions
| EC Number | Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|---|
| 3.1.13.1 | K+ | required for activity | Mammalia |  |
| 3.1.13.1 | K+ | required for activity | Drosophila sp. (in: flies) | |
| 3.1.13.1 | K+ | required for activity | Escherichia coli | |
| 3.1.13.1 | K+ | required for activity | Homo sapiens | |
| 3.1.13.1 | K+ | required for activity | Saccharomyces cerevisiae | |
| 3.1.13.1 | K+ | required for activity | Haloferax volcanii | |
| 3.1.13.1 | K+ | required for activity | Caenorhabditis elegans | |
| 3.1.13.1 | K+ | required for activity | Embryophyta | |
| 3.1.13.1 | K+ | required for activity | Streptomyces coelicolor | |
| 3.1.13.1 | K+ | required for activity | Chlamydomonas sp. | |
| 3.1.13.1 | K+ | required for activity | Synechocystis sp. | |
| 3.1.13.1 | K+ | required for activity | uncultured Gammaproteobacteria bacterium | |
| 3.1.13.1 | Mg2+ | required for activity | Mammalia | |
| 3.1.13.1 | Mg2+ | required for activity | Drosophila sp. (in: flies) | |
| 3.1.13.1 | Mg2+ | required for activity | Escherichia coli | |
| 3.1.13.1 | Mg2+ | required for activity | Homo sapiens | |
| 3.1.13.1 | Mg2+ | required for activity | Saccharomyces cerevisiae | |
| 3.1.13.1 | Mg2+ | required for activity | Haloferax volcanii | |
| 3.1.13.1 | Mg2+ | required for activity | Caenorhabditis elegans | |
| 3.1.13.1 | Mg2+ | required for activity | Embryophyta | |
| 3.1.13.1 | Mg2+ | required for activity | Streptomyces coelicolor | |
| 3.1.13.1 | Mg2+ | required for activity | Chlamydomonas sp. | |
| 3.1.13.1 | Mg2+ | required for activity | Synechocystis sp. | |
| 3.1.13.1 | Mg2+ | required for activity | uncultured Gammaproteobacteria bacterium | |
Molecular Weight [Da]
| EC Number | Molecular Weight [Da] | Molecular Weight Maximum [Da] | Comment | Organism |
|---|---|---|---|---|
| 3.1.13.1 | 67000 | - |
1 * 67000 | Mammalia |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Drosophila sp. (in: flies) |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Escherichia coli |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Homo sapiens |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Saccharomyces cerevisiae |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Haloferax volcanii |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Caenorhabditis elegans |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Embryophyta |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Streptomyces coelicolor |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Chlamydomonas sp. |
| 3.1.13.1 | 67000 | - |
1 * 67000 | Synechocystis sp. |
| 3.1.13.1 | 67000 | - |
1 * 67000 | uncultured Gammaproteobacteria bacterium |
Organism
| EC Number | Organism | UniProt | Comment | Textmining |
|---|---|---|---|---|
| 3.1.13.1 | Caenorhabditis elegans | - |
- |
- |
| 3.1.13.1 | Chlamydomonas sp. | - |
- |
- |
| 3.1.13.1 | Drosophila sp. (in: flies) | - |
- |
- |
| 3.1.13.1 | Embryophyta | - |
- |
- |
| 3.1.13.1 | Escherichia coli | - |
- |
- |
| 3.1.13.1 | Haloferax volcanii | - |
- |
- |
| 3.1.13.1 | Homo sapiens | - |
- |
- |
| 3.1.13.1 | Mammalia | - |
- |
- |
| 3.1.13.1 | no activity in archaebacteria | - |
except Halobacterium species NRC-1 | - |
| 3.1.13.1 | Saccharomyces cerevisiae | - |
- |
- |
| 3.1.13.1 | Streptomyces coelicolor | - |
- |
- |
| 3.1.13.1 | Synechocystis sp. | - |
cyanobacteria | - |
| 3.1.13.1 | uncultured Gammaproteobacteria bacterium | - |
- |
- |
Substrates and Products (Substrate)
| EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|---|
| 3.1.13.1 | mRNA + H2O | - |
Mammalia | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Drosophila sp. (in: flies) | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Escherichia coli | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Homo sapiens | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Saccharomyces cerevisiae | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Haloferax volcanii | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Caenorhabditis elegans | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Embryophyta | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Streptomyces coelicolor | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Chlamydomonas sp. | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
Synechocystis sp. | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | mRNA + H2O | - |
uncultured Gammaproteobacteria bacterium | 5'-phosphomononucleotide | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Mammalia | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Drosophila sp. (in: flies) | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Escherichia coli | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Homo sapiens | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Saccharomyces cerevisiae | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Haloferax volcanii | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Caenorhabditis elegans | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Embryophyta | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Streptomyces coelicolor | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Chlamydomonas sp. | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
Synechocystis sp. | ? | - |
? | |
| 3.1.13.1 | poly(A) + H2O | - |
uncultured Gammaproteobacteria bacterium | ? | - |
? | |
Subunits
| EC Number | Subunits | Comment | Organism |
|---|---|---|---|
| 3.1.13.1 | monomer | 1 * 67000 | Mammalia |
| 3.1.13.1 | monomer | 1 * 67000 | Drosophila sp. (in: flies) |
| 3.1.13.1 | monomer | 1 * 67000 | Escherichia coli |
| 3.1.13.1 | monomer | 1 * 67000 | Homo sapiens |
| 3.1.13.1 | monomer | 1 * 67000 | Saccharomyces cerevisiae |
| 3.1.13.1 | monomer | 1 * 67000 | Haloferax volcanii |
| 3.1.13.1 | monomer | 1 * 67000 | Caenorhabditis elegans |
| 3.1.13.1 | monomer | 1 * 67000 | Embryophyta |
| 3.1.13.1 | monomer | 1 * 67000 | Streptomyces coelicolor |
| 3.1.13.1 | monomer | 1 * 67000 | Chlamydomonas sp. |
| 3.1.13.1 | monomer | 1 * 67000 | Synechocystis sp. |
| 3.1.13.1 | monomer | 1 * 67000 | uncultured Gammaproteobacteria bacterium |
Synonyms
| EC Number | Synonyms | Comment | Organism |
|---|---|---|---|
| 3.1.13.1 | RNase II | - |
Mammalia |
| 3.1.13.1 | RNase II | - |
Drosophila sp. (in: flies) |
| 3.1.13.1 | RNase II | - |
Escherichia coli |
| 3.1.13.1 | RNase II | - |
Homo sapiens |
| 3.1.13.1 | RNase II | - |
Saccharomyces cerevisiae |
| 3.1.13.1 | RNase II | - |
Haloferax volcanii |
| 3.1.13.1 | RNase II | - |
Caenorhabditis elegans |
| 3.1.13.1 | RNase II | - |
Embryophyta |
| 3.1.13.1 | RNase II | - |
Streptomyces coelicolor |
| 3.1.13.1 | RNase II | - |
Chlamydomonas sp. |
| 3.1.13.1 | RNase II | - |
Synechocystis sp. |
| 3.1.13.1 | RNase II | - |
uncultured Gammaproteobacteria bacterium |
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Release 2023.1 (January 2023)
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