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Literature summary extracted from

  • Nikolajewa, S.; Beyer, A.; Friedel, M.; Hollunder, J.; Wilhelm, T.
    Common patterns in type II restriction enzyme binding sites (2005), Nucleic Acids Res., 33, 2726-2733.
    View publication on PubMedView publication on EuropePMC

Organism

EC Number Organism UniProt Comment Textmining
3.1.21.4 Bacillus amyloliquefaciens
-
-
-
3.1.21.4 Bacillus subtilis
-
-
-
3.1.21.4 Citrobacter freundii
-
-
-
3.1.21.4 Escherichia coli
-
-
-
3.1.21.4 Geobacillus stearothermophilus
-
-
-
3.1.21.4 Haemophilus influenzae
-
-
-
3.1.21.4 Lentzea aerocolonigenes
-
-
-
3.1.21.4 Moraxella sp.
-
-
-
3.1.21.4 Mycoplasma sp.
-
-
-
3.1.21.4 Neisseria gonorrhoeae
-
-
-
3.1.21.4 Planomicrobium okeanokoites
-
-
-
3.1.21.4 Proteus vulgaris
-
-
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
3.1.21.4 DNA + H2O recognition sequence of BamHI: GGATCC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Bacillus amyloliquefaciens double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of BgII: GCCNNNNNGGC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Bacillus subtilis double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of BglII: AGATCT. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Bacillus subtilis double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of Bse634I: RCCGGY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Geobacillus stearothermophilus double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of BsoBI: CYCGRG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Geobacillus stearothermophilus double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of BstYI: GATATC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Escherichia coli double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of BstYI: RGATCY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Geobacillus stearothermophilus double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of Cfr10I: RCCGGY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Citrobacter freundii double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of EcoO109I: RGGNCCY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Escherichia coli double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of EcoRI: GAATTC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Escherichia coli double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of EcoRII: CCWGG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Escherichia coli double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of FokI: GGATG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Planomicrobium okeanokoites double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of HincII: GTYRAC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Haemophilus influenzae double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of HindIII: AAGCTT. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Haemophilus influenzae double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of MspI: CCGG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Moraxella sp. double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of MunI: CAATTG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Mycoplasma sp. double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of NaeI: GCCGGC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Lentzea aerocolonigenes double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of NgoMIV: GCCGGC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Neisseria gonorrhoeae double-stranded DNA fragments with terminal 5'-phosphates
-
 ?
3.1.21.4 DNA + H2O recognition sequence of PvuII: CAGCTG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes Proteus vulgaris double-stranded DNA fragments with terminal 5'-phosphates
-
 ?

Synonyms

EC Number Synonyms Comment Organism
3.1.21.4 BamHI
-
 Bacillus amyloliquefaciens
3.1.21.4 BgII
-
 Bacillus subtilis
3.1.21.4 BglII
-
 Bacillus subtilis
3.1.21.4 Bse634I
-
 Geobacillus stearothermophilus
3.1.21.4 BsoBI
-
 Geobacillus stearothermophilus
3.1.21.4 BstYI
-
 Geobacillus stearothermophilus
3.1.21.4 Cfr10I
-
 Citrobacter freundii
3.1.21.4 EcoO109I
-
 Escherichia coli
3.1.21.4 EcoRI
-
 Escherichia coli
3.1.21.4 EcoRII
-
 Escherichia coli
3.1.21.4 EcoRV
-
 Escherichia coli
3.1.21.4 FokI
-
 Planomicrobium okeanokoites
3.1.21.4 HincII
-
 Haemophilus influenzae
3.1.21.4 HindIII
-
 Haemophilus influenzae
3.1.21.4 MspI
-
 Moraxella sp.
3.1.21.4 MunI
-
 Mycoplasma sp.
3.1.21.4 NaeI
-
 Lentzea aerocolonigenes
3.1.21.4 NgoMIV
-
 Neisseria gonorrhoeae
3.1.21.4 PvuII
-
 Proteus vulgaris