EC Number | Inhibitors | Comment | Organism | Structure |
---|---|---|---|---|
3.5.1.88 | actinonin | - |
Arabidopsis thaliana | |
3.5.1.88 | actinonin | - |
Escherichia coli | |
3.5.1.88 | imino[(5-methoxy-5-oxo-4-[2-(sulfanylmethyl)hexanoyl]aminopentyl)amino]methaneamine | - |
Arabidopsis thaliana | |
3.5.1.88 | imino[(5-methoxy-5-oxo-4-[2-(sulfanylmethyl)hexanoyl]aminopentyl)amino]methaneamine | - |
Escherichia coli | |
3.5.1.88 | methyl-1-(sulfanylmethyl)hexanoate | - |
Arabidopsis thaliana | |
3.5.1.88 | methyl-1-(sulfanylmethyl)hexanoate | - |
Escherichia coli | |
3.5.1.88 | Phe-Arg-beta-naphthylamide | - |
Arabidopsis thaliana | |
3.5.1.88 | thiorphan | - |
Arabidopsis thaliana |
EC Number | KM Value [mM] | KM Value Maximum [mM] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|---|
3.5.1.88 | additional information | - |
additional information | - |
Arabidopsis thaliana | |
3.5.1.88 | 0.23 | - |
N-Formyl-Met-Leu-Phe | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.25 | - |
N-formyl-Met-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.27 | - |
N-formyl-Met-Ala-Ser | enzyme form PDF1A | Solanum lycopersicum | |
3.5.1.88 | 0.42 | - |
N-formyl-Arg(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.42 | - |
N-formyl-Ser(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.5 | - |
N-formyl-L-Arg-amide | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 0.6 | - |
N-formyl-Nle-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.74 | - |
N-formyl-Asp(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.79 | - |
N-formyl-Leu(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 1 | - |
N-formyl-Asp(NH2) | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 1 | - |
N-formyl-Ser(NH2) | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 2 | - |
N-formyl-Met-Ser-Asn-Glu | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 2.9 | - |
N-formyl-Gly(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 3 | - |
N-formyl-Phe-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 4.1 | - |
N-formyl-Met-Ser-Asn-Glu | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 4.3 | - |
N-formyl-Gly(NH2) | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 5.6 | - |
N-formyl-Met-Ala-Ser | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 8 | - |
N-formyl-Met-Leu-Glu | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 8.2 | - |
N-formyl-Met-Ala-Ser | enzyme form PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 9.4 | - |
N-formyl-Nva-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 11 | - |
N-formyl-Nle-Ala-Ser | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 12 | - |
N-formyl-Met-Leu-Glu | enzyme form Ni-PDF1B | Arabidopsis thaliana |
EC Number | Localization | Comment | Organism | GeneOntology No. | Textmining |
---|---|---|---|---|---|
3.5.1.88 | chloroplast | - |
Arabidopsis thaliana | 9507 | - |
EC Number | Metals/Ions | Comment | Organism | Structure |
---|---|---|---|---|
3.5.1.88 | Fe | - |
Escherichia coli | |
3.5.1.88 | Fe | PDF1B is an iron enzyme | Arabidopsis thaliana | |
3.5.1.88 | Zn | PDF1A is a zinc enzyme, contains 0.8 mol of Zn per mol of enzyme | Arabidopsis thaliana | |
3.5.1.88 | Zn | PDF1A is a zinc enzyme, contains 0.8 mol of Zn per mol of enzyme | Solanum lycopersicum |
EC Number | Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
3.5.1.88 | N-formyl-L-methionine-polypeptide + H2O | Escherichia coli | - |
formate + L-methionine-polypeptide | - |
? | |
3.5.1.88 | N-formyl-L-methionine-polypeptide + H2O | Arabidopsis thaliana | deformylase is likely to play an essential role in the chloroplast | formate + L-methionine-polypeptide | - |
? |
EC Number | Organism | UniProt | Comment | Textmining |
---|---|---|---|---|
3.5.1.88 | Arabidopsis thaliana | - |
two classes of PDF: PDF1A and PDF1B | - |
3.5.1.88 | Escherichia coli | - |
- |
- |
3.5.1.88 | Solanum lycopersicum | - |
two classes of PDF: PDF1A and PDF1B | - |
EC Number | Purification (Comment) | Organism |
---|---|---|
3.5.1.88 | two classes of PDF: PDF1A and PDF1B | Arabidopsis thaliana |
3.5.1.88 | two classes of PDF: PDF1A and PDF1B | Solanum lycopersicum |
EC Number | Source Tissue | Comment | Organism | Textmining |
---|---|---|---|---|
3.5.1.88 | seedling | - |
Arabidopsis thaliana | - |
EC Number | Storage Stability | Organism |
---|---|---|
3.5.1.88 | -20°C, PDF1A is stable for at least 6 months | Arabidopsis thaliana |
3.5.1.88 | -20°C, PDF1A is stable for at least 6 months | Solanum lycopersicum |
EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|---|
3.5.1.88 | N-formyl-Asp(NH2) + H2O | - |
Arabidopsis thaliana | ? | - |
? | |
3.5.1.88 | N-formyl-Gly(NH2) + H2O | - |
Arabidopsis thaliana | ? | - |
? | |
3.5.1.88 | N-formyl-L-Arg(NH2) + H2O | - |
Arabidopsis thaliana | ? | - |
? | |
3.5.1.88 | N-formyl-L-Arg-amide + H2O | - |
Arabidopsis thaliana | ? | - |
? | |
3.5.1.88 | N-formyl-L-methionine-polypeptide + H2O | - |
Escherichia coli | formate + L-methionine-polypeptide | - |
? | |
3.5.1.88 | N-formyl-L-methionine-polypeptide + H2O | deformylase is likely to play an essential role in the chloroplast | Arabidopsis thaliana | formate + L-methionine-polypeptide | - |
? | |
3.5.1.88 | N-formyl-Leu(NH2) + H2O | - |
Arabidopsis thaliana | ? | - |
? | |
3.5.1.88 | N-formyl-Met-Ala + H2O | - |
Escherichia coli | formate + Met-Ala | - |
? | |
3.5.1.88 | N-formyl-Met-Ala + H2O | - |
Arabidopsis thaliana | formate + Met-Ala | - |
? | |
3.5.1.88 | N-formyl-Met-Ala(OCH3) + H2O | - |
Escherichia coli | formate + Met-Ala(OCH3) | - |
? | |
3.5.1.88 | N-formyl-Met-Ala(OCH3) + H2O | - |
Arabidopsis thaliana | formate + Met-Ala(OCH3) | - |
? | |
3.5.1.88 | N-formyl-Met-Ala-Ser + H2O | - |
Escherichia coli | formate + Met-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Met-Ala-Ser + H2O | - |
Arabidopsis thaliana | formate + Met-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Met-Ala-Ser + H2O | - |
Solanum lycopersicum | formate + Met-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Met-Leu-Glu + H2O | - |
Escherichia coli | formate + Met-Leu-Glu | - |
? | |
3.5.1.88 | N-formyl-Met-Leu-Glu + H2O | - |
Arabidopsis thaliana | formate + Met-Leu-Glu | - |
? | |
3.5.1.88 | N-formyl-Met-Leu-p-nitroanilide + H2O | - |
Escherichia coli | formate + Met-Leu-p-nitroanilide | - |
? | |
3.5.1.88 | N-formyl-Met-Leu-p-nitroanilide + H2O | - |
Arabidopsis thaliana | formate + Met-Leu-p-nitroanilide | - |
? | |
3.5.1.88 | N-formyl-Met-Leu-Phe + H2O | - |
Escherichia coli | formate + Met-Leu-Phe | - |
? | |
3.5.1.88 | N-formyl-Met-Leu-Phe + H2O | - |
Arabidopsis thaliana | formate + Met-Leu-Phe | - |
? | |
3.5.1.88 | N-formyl-Met-Ser-Asn-Glu + H2O | - |
Escherichia coli | formate + Met-Ser-Asn-Glu | - |
? | |
3.5.1.88 | N-formyl-Met-Ser-Asn-Glu + H2O | - |
Arabidopsis thaliana | formate + Met-Ser-Asn-Glu | - |
? | |
3.5.1.88 | N-formyl-Nle-Ala(NH2) + H2O | - |
Escherichia coli | formate + Nle-Ala(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Ala(NH2) + H2O | - |
Arabidopsis thaliana | formate + Nle-Ala(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Ala-Ser + H2O | - |
Escherichia coli | formate + Nle-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Nle-Ala-Ser + H2O | - |
Arabidopsis thaliana | formate + Nle-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Nle-Arg(NH2) + H2O | - |
Escherichia coli | formate + Nle-Arg(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Arg(NH2) + H2O | - |
Arabidopsis thaliana | formate + Nle-Arg(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Asp(NH2) + H2O | - |
Escherichia coli | formate + Nle-Asp(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Asp(NH2) + H2O | - |
Arabidopsis thaliana | formate + Nle-Asp(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Gly(NH2) + H2O | - |
Escherichia coli | formate + Nle-Gly(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Gly(NH2) + H2O | - |
Arabidopsis thaliana | formate + Nle-Gly(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Leu(NH2) + H2O | - |
Escherichia coli | formate + Nle-Leu(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Leu(NH2) + H2O | - |
Arabidopsis thaliana | formate + Nle-Leu(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-NH(CH3) + H2O | - |
Escherichia coli | formate + Nle-NH(CH3) | - |
? | |
3.5.1.88 | N-formyl-Nle-NH(CH3) + H2O | - |
Arabidopsis thaliana | formate + Nle-NH(CH3) | - |
? | |
3.5.1.88 | N-formyl-Nle-NH2 + H2O | - |
Escherichia coli | formate + Nle-Nle-NH2 | - |
? | |
3.5.1.88 | N-formyl-Nle-NH2 + H2O | - |
Arabidopsis thaliana | formate + Nle-Nle-NH2 | - |
? | |
3.5.1.88 | N-formyl-Nle-Ser(NH2) + H2O | - |
Escherichia coli | formate + Nle-Ser(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nle-Ser(NH2) + H2O | - |
Arabidopsis thaliana | formate + Nle-Ser(NH2) | - |
? | |
3.5.1.88 | N-formyl-Nva-Ala-Ser + H2O | - |
Escherichia coli | formate + Nva-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Nva-Ala-Ser + H2O | - |
Arabidopsis thaliana | formate + Nva-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Phe-Ala-Ser + H2O | - |
Escherichia coli | formate + Phe-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Phe-Ala-Ser + H2O | - |
Arabidopsis thaliana | formate + Phe-Ala-Ser | - |
? | |
3.5.1.88 | N-formyl-Ser(NH2) + H2O | - |
Arabidopsis thaliana | ? | - |
? |
EC Number | Turnover Number Minimum [1/s] | Turnover Number Maximum [1/s] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|---|
3.5.1.88 | additional information | - |
additional information | - |
Arabidopsis thaliana | |
3.5.1.88 | 0.36 | - |
N-formyl-Nle-Leu(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.4 | - |
N-formyl-Nle-Asp(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.6 | - |
N-formyl-Phe-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 0.7 | - |
N-Formyl-Met-Leu-Phe | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 1.1 | - |
N-formyl-Met-Leu-Glu | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 1.4 | - |
N-formyl-Nle-Gly(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 1.9 | - |
N-formyl-Met-Ser-Asn-Glu | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 5 | - |
N-formyl-Nle-Arg(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 6.4 | - |
N-formyl-Nle-Asp(NH2) | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 9.2 | - |
N-formyl-Met-Leu-Glu | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 10 | - |
N-formyl-Nle-Ser(NH2) | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 11 | - |
N-formyl-Met-Ser-Asn-Glu | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 13 | - |
N-formyl-Met-Ala-Ser | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 15 | - |
N-formyl-Met-Ala-Ser | enzyme form PDF1A | Solanum lycopersicum | |
3.5.1.88 | 18 | - |
N-formyl-Nva-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 22 | - |
N-formyl-Met-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 26 | - |
N-formyl-Nle-Ala-Ser | enzyme form PDF1A | Arabidopsis thaliana | |
3.5.1.88 | 51 | - |
N-formyl-Nle-Ser(NH2) | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 75 | - |
N-formyl-Met-Ala-Ser | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 136 | - |
N-formyl-Nle-Ala-Ser | enzyme form Ni-PDF1B | Arabidopsis thaliana | |
3.5.1.88 | 138 | - |
N-formyl-Nle-Arg(NH2) | enzyme form Ni-PDF1B | Arabidopsis thaliana |