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Literature summary for 6.5.1.1 extracted from

  • Kim, D.J.; Kim, O.; Kim, H.W.; Kim, H.S.; Lee, S.J.; Suh, S.W.
    ATP-dependent DNA ligase from Archaeoglobus fulgidus displays a tightly closed conformation (2009), Acta Crystallogr. Sect. F, 65, 544-550.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
expressed in Escherichia coli Rosetta2(DE3)pLysS cells Archaeoglobus fulgidus

Crystallization (Commentary)

Crystallization (Comment) Organism
ATP-dependent DNA ligase in the DNA-unbound unadenylated state, hanging drop vapor diffusion method, using 100 mM Tris-HCl pH 9.0, 0.4 M sodium dihydrogen phosphate, 1.2 M dipotassium hydrogen phosphate, and 10 mM magnesium chloride, at 4°C Archaeoglobus fulgidus

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
ATP + (deoxyribonucleotide)n + (deoxyribonucleotide)m Archaeoglobus fulgidus
-
AMP + diphosphate + (deoxyribonucleotide)n+m
-
?

Organism

Organism UniProt Comment Textmining
Archaeoglobus fulgidus O29632
-
-

Purification (Commentary)

Purification (Comment) Organism
Ni-NTA agarose column chromatography, Source 15Q ion-exchange column chromatography, and Superdex-200 gel filtration Archaeoglobus fulgidus

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
ATP + (deoxyribonucleotide)n + (deoxyribonucleotide)m
-
Archaeoglobus fulgidus AMP + diphosphate + (deoxyribonucleotide)n+m
-
?

Synonyms

Synonyms Comment Organism
ATP-dependent DNA ligase
-
Archaeoglobus fulgidus

Cofactor

Cofactor Comment Organism Structure
ATP
-
Archaeoglobus fulgidus