BRENDA - Enzyme Database
show all sequences of 6.3.5.10

A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity

Woodson, J.D.; Zayas, C.L.; Escalante-Semerena, J.C.; J. Bacteriol. 185, 7193-7201 (2003)

Data extracted from this reference:

Cloned(Commentary)
Commentary
Organism
cbiP gene
Halobacterium sp.
cbiP gene
Salmonella enterica
Engineering
Amino acid exchange
Commentary
Organism
additional information
mutant strain JE6738 with in-frame deletion of cbiP, deficient in cobinamide biosynthesis, auxotrophic for adenosylcorbyric acid
Halobacterium sp.
additional information
cbiP mutants, nutritional studies
Salmonella enterica
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Halobacterium sp.
cobinamide biosynthesis
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Salmonella enterica
involved in the de novo cobinamide biosynthesis pathway
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Halobacterium sp. NRC-1
cobinamide biosynthesis
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Salmonella enterica TR6583
involved in the de novo cobinamide biosynthesis pathway
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Halobacterium sp.
-
strains NRC-1 and MPK414
-
Salmonella enterica
-
-
-
Salmonella enterica TR6583
-
-
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Salmonella enterica
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Halobacterium sp.
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
cobinamide biosynthesis
655868
Halobacterium sp.
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
involved in the de novo cobinamide biosynthesis pathway
655868
Salmonella enterica
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Halobacterium sp. NRC-1
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
cobinamide biosynthesis
655868
Halobacterium sp. NRC-1
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Salmonella enterica TR6583
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
involved in the de novo cobinamide biosynthesis pathway
655868
Salmonella enterica TR6583
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
Cloned(Commentary) (protein specific)
Commentary
Organism
cbiP gene
Halobacterium sp.
cbiP gene
Salmonella enterica
Engineering (protein specific)
Amino acid exchange
Commentary
Organism
additional information
mutant strain JE6738 with in-frame deletion of cbiP, deficient in cobinamide biosynthesis, auxotrophic for adenosylcorbyric acid
Halobacterium sp.
additional information
cbiP mutants, nutritional studies
Salmonella enterica
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Halobacterium sp.
cobinamide biosynthesis
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Salmonella enterica
involved in the de novo cobinamide biosynthesis pathway
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Halobacterium sp. NRC-1
cobinamide biosynthesis
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
Salmonella enterica TR6583
involved in the de novo cobinamide biosynthesis pathway
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
?
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Salmonella enterica
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Halobacterium sp.
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
cobinamide biosynthesis
655868
Halobacterium sp.
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
involved in the de novo cobinamide biosynthesis pathway
655868
Salmonella enterica
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Halobacterium sp. NRC-1
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
cobinamide biosynthesis
655868
Halobacterium sp. NRC-1
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
-
655868
Salmonella enterica TR6583
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
ATP + adenosylcobyrinic acid a,c-diamide + L-glutamine + H2O
involved in the de novo cobinamide biosynthesis pathway
655868
Salmonella enterica TR6583
ADP + phosphate + adenosylcobyric acid + L-glutamate
-
-
-
?
Other publictions for EC 6.3.5.10
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
674206
Williams
The multiple amidation reactio ...
Salmonella enterica subsp. enterica serovar Typhimurium
J. Am. Chem. Soc.
129
294-295
2007
-
-
-
-
-
-
1
4
-
-
-
-
-
2
-
-
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4
-
-
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-
4
-
-
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-
1
-
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-
-
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-
1
1
4
-
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-
-
-
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-
-
-
-
-
4
-
-
-
-
4
-
-
-
-
-
-
-
-
-
-
655868
Woodson
A new pathway for salvaging th ...
Halobacterium sp., Salmonella enterica, Salmonella enterica TR6583
J. Bacteriol.
185
7193-7201
2003
-
-
2
-
2
-
-
-
-
-
-
4
-
3
-
-
-
-
-
-
-
-
8
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
-
-
2
-
-
-
-
-
-
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-
4
-
-
-
-
-
-
-
-
8
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
644278
Warren
The biosynthesis of adenosylco ...
Pseudomonas denitrificans (nomen rejiciendum), Salmonella enterica
Nat. Prod. Rep.
19
390-412
2002
-
-
-
-
-
-
-
-
-
-
1
2
-
2
-
-
-
-
-
-
-
-
4
1
-
-
-
-
-
-
-
1
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
1
2
-
-
-
-
-
-
-
-
4
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
653832
Galperin
The synthetase domains of coba ...
Escherichia coli, Pseudomonas denitrificans (nomen rejiciendum)
Proteins
41
238-247
2000
-
-
-
-
-
-
-
1
-
1
2
2
-
5
-
-
-
1
-
-
-
-
4
2
-
-
-
-
2
-
-
1
-
-
-
-
-
-
1
-
-
-
-
-
-
1
-
1
2
2
-
-
-
-
-
-
-
-
4
2
-
-
-
-
2
-
-
-
-
-
-
-
-
-
644281
Blanche F.; Maton
Purification and characterizat ...
Pseudomonas denitrificans (nomen rejiciendum)
J. Bacteriol.
174
7452-7454
1992
-
-
-
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
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-
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-
-
-
-
-
-
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-
1
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-
1
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-
-
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-
-
-
-
-
-
-
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-
636869
Crouzet
Nucleotide sequence and geneti ...
Pseudomonas denitrificans (nomen rejiciendum), Pseudomonas denitrificans (nomen rejiciendum) SC510 Rifr(pXL617)
J. Bacteriol.
173
6074-6087
1991
-
-
1
-
-
-
-
-
-
-
2
2
-
4
-
-
1
-
-
-
-
-
4
1
-
-
-
-
-
-
-
-
-
-
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-
1
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-
-
-
-
-
-
-
-
-
2
2
-
-
-
1
-
-
-
-
4
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
651618
Blanche
Biosynthesis of vitamin B12: s ...
Pseudomonas denitrificans (nomen rejiciendum)
J. Bacteriol.
173
6046-6051
1991
-
-
1
-
-
1
-
14
-
1
3
2
-
1
1
-
1
-
-
-
1
2
14
2
-
-
-
-
1
-
-
1
-
1
-
-
-
1
1
-
-
1
-
-
-
14
-
1
3
2
-
1
-
1
-
-
1
2
14
2
-
-
-
-
1
-
-
1
-
-
-
-
-
-