Literature summary for 5.5.1.13 extracted from

Chen, F.; Tholl, D.; Bohlmann, J.; Pichersky, E.
The family of terpene synthases in plants: A mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom (2011), Plant J., 66, 212-229.

Cloned(Commentary)

Cloned (Comment)	Organism
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Arabidopsis thaliana
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Picea abies
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Abies grandis
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Sorghum bicolor
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Oryza sativa
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Physcomitrium patens
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Vitis vinifera
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Picea glauca
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Populus trichocarpa
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Picea sitchensis
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Selaginella moellendorffii
gene TPS, genetic organization on the chromosome, genotyping and phylogenetic analysis, detailed overview	Picea engelmannii x Picea glauca

Localization

Localization	Comment	Organism	GeneOntology No.	Textmining
chloroplast	-	Arabidopsis thaliana	9507	-
chloroplast	-	Picea abies	9507	-
chloroplast	-	Abies grandis	9507	-
chloroplast	-	Sorghum bicolor	9507	-
chloroplast	-	Oryza sativa	9507	-
chloroplast	-	Physcomitrium patens	9507	-
chloroplast	-	Vitis vinifera	9507	-
chloroplast	-	Picea glauca	9507	-
chloroplast	-	Populus trichocarpa	9507	-
chloroplast	-	Picea sitchensis	9507	-
chloroplast	-	Selaginella moellendorffii	9507	-
chloroplast	-	Picea engelmannii x Picea glauca	9507	-

Organism

Organism	UniProt	Comment	Textmining
Abies grandis	-	-	-
Arabidopsis thaliana	-	40 TPS genes	-
Oryza sativa	-	57 TPS genes	-
Physcomitrium patens	-	single TPS gene	-
Picea abies	-	-	-
Picea engelmannii x Picea glauca	-	hybrid white spruce	-
Picea glauca	-	-	-
Picea sitchensis	-	-	-
Populus trichocarpa	-	68 TPS genes	-
Selaginella moellendorffii	-	18 TPS genes	-
Sorghum bicolor	-	48 TPS genes	-
Vitis vinifera	-	152 TPS genes	-

Reaction

Reaction	Comment	Organism	Reaction ID
geranylgeranyl diphosphate = ent-copalyl diphosphate	reaction mechanism	Arabidopsis thaliana	a

Synonyms

Synonyms	Comment	Organism
copalyl synthase/kaurene synthase	-	Physcomitrium patens
CPS	-	Arabidopsis thaliana
CPS	-	Picea abies
CPS	-	Abies grandis
CPS	-	Sorghum bicolor
CPS	-	Oryza sativa
CPS	-	Physcomitrium patens
CPS	-	Vitis vinifera
CPS	-	Picea glauca
CPS	-	Populus trichocarpa
CPS	-	Picea sitchensis
CPS	-	Selaginella moellendorffii
CPS	-	Picea engelmannii x Picea glauca
CPS/KS	-	Physcomitrium patens

General Information

General Information	Comment	Organism
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Arabidopsis thaliana
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Picea abies
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Abies grandis
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Sorghum bicolor
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Oryza sativa
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Physcomitrium patens
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Vitis vinifera
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Picea glauca
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Populus trichocarpa
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Picea sitchensis
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Selaginella moellendorffii
evolution	TPS genes in both gymnosperms and angiosperms are likely derived from a duplication of an ancestral gene encoding a bifunctional kaurene synthase, TPS family size and comparison of physiological functions of TPS enzymes in different organisms, overview. The genomes of some model angiosperms and gymnosperms contain 40-152 TPS genes, not all of them functional and most of the functional ones having lost activity in either the CPS- or KS-type domains. TPS genes are generally divided into seven clades, with some plant lineages having a majority of their TPS genes in one or two clades, indicating lineage-specific expansion of specific types of genes. Evolutionary plasticity is evident in the TPS family, with closely related enzymes differing in their product profiles, subcellular localization, or the in planta substrates they use. Based on the reaction mechanism and products formed, plant TPSs can be classified into two groups: class I and class II, detailed overview	Picea engelmannii x Picea glauca
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Arabidopsis thaliana
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Picea abies
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Abies grandis
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Sorghum bicolor
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Oryza sativa
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Physcomitrium patens
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Vitis vinifera
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Picea glauca
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Populus trichocarpa
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Picea sitchensis
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Selaginella moellendorffii
physiological function	the TPS gene encodes a copalyl synthase/kaurene synthase, CPS/KS, a bifunctional enzyme. Copalyl diphosphate synthase, CPS, and kaurene synthase, KS, convert geranylgeranyl diphosphate first to copalyl diphosphate, then to ent-kaurene, the precursor of all plant gibberellins	Picea engelmannii x Picea glauca