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Literature summary for 5.4.3.5 extracted from

  • Fonknechten, N.; Perret, A.; Perchat, N.; Tricot, S.; Lechaplais, C.; Vallenet, D.; Vergne, C.; Zaparucha, A.; Le Paslier, D.; Weissenbach, J.; Salanoubat, M.
    A conserved gene cluster rules anaerobic oxidative degradation of L-ornithine (2009), J. Bacteriol., 191, 3162-3167.
    View publication on PubMedView publication on EuropePMC

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
D-ornithine Acetoanaerobium sticklandii
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Clostridioides difficile
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Cutibacterium acnes
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Alkaliphilus metalliredigens
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Alkaliphilus oremlandii
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Fervidobacterium nodosum Rt17-B1
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Petrotoga mobilis
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Thermoanaerobacter pseudethanolicus
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Natranaerobius thermophilus
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Thermosipho melanesiensis
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Natranaerobius thermophilus JW/NM-WN-LF
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Clostridioides difficile 630
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Thermosipho melanesiensis BI429
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Petrotoga mobilis SJ95
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Thermoanaerobacter pseudethanolicus MB4
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Cutibacterium acnes KPA171202
-
(2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine Alkaliphilus oremlandii OhlLAs
-
(2R,4S)-2,4-diaminopentanoate
-
r

Organism

Organism UniProt Comment Textmining
Acetoanaerobium sticklandii
-
strain DSM 619
-
Alkaliphilus metalliredigens
-
-
-
Alkaliphilus oremlandii
-
-
-
Alkaliphilus oremlandii OhlLAs
-
-
-
Clostridioides difficile
-
-
-
Clostridioides difficile 630
-
-
-
Cutibacterium acnes
-
-
-
Cutibacterium acnes KPA171202
-
-
-
Fervidobacterium nodosum Rt17-B1
-
-
-
Natranaerobius thermophilus
-
-
-
Natranaerobius thermophilus JW/NM-WN-LF
-
-
-
Petrotoga mobilis
-
-
-
Petrotoga mobilis SJ95
-
-
-
Thermoanaerobacter pseudethanolicus
-
-
-
Thermoanaerobacter pseudethanolicus MB4
-
-
-
Thermosipho melanesiensis
-
-
-
Thermosipho melanesiensis BI429
-
-
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
D-ornithine
-
Acetoanaerobium sticklandii (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Clostridioides difficile (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Cutibacterium acnes (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Alkaliphilus metalliredigens (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Alkaliphilus oremlandii (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Fervidobacterium nodosum Rt17-B1 (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Petrotoga mobilis (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Thermoanaerobacter pseudethanolicus (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Natranaerobius thermophilus (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Thermosipho melanesiensis (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Natranaerobius thermophilus JW/NM-WN-LF (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Clostridioides difficile 630 (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Thermosipho melanesiensis BI429 (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Petrotoga mobilis SJ95 (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Thermoanaerobacter pseudethanolicus MB4 (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Cutibacterium acnes KPA171202 (2R,4S)-2,4-diaminopentanoate
-
r
D-ornithine
-
Alkaliphilus oremlandii OhlLAs (2R,4S)-2,4-diaminopentanoate
-
r

Synonyms

Synonyms Comment Organism
D-ornithine aminomutase
-
Acetoanaerobium sticklandii
D-ornithine aminomutase
-
Clostridioides difficile
D-ornithine aminomutase
-
Cutibacterium acnes
D-ornithine aminomutase
-
Alkaliphilus metalliredigens
D-ornithine aminomutase
-
Alkaliphilus oremlandii
D-ornithine aminomutase
-
Fervidobacterium nodosum Rt17-B1
D-ornithine aminomutase
-
Petrotoga mobilis
D-ornithine aminomutase
-
Thermoanaerobacter pseudethanolicus
D-ornithine aminomutase
-
Natranaerobius thermophilus
D-ornithine aminomutase
-
Thermosipho melanesiensis
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE and or-4, or-5 is placed elsewhere in the genome Natranaerobius thermophilus
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4 and or-5 are placed elsewhere in the genome Fervidobacterium nodosum Rt17-B1
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4 and or-5 are placed elsewhere in the genome Petrotoga mobilis
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4 and or-5 are placed elsewhere in the genome Thermosipho melanesiensis
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Acetoanaerobium sticklandii
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Clostridioides difficile
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Cutibacterium acnes
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Alkaliphilus metalliredigens
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Alkaliphilus oremlandii
oraE gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Thermoanaerobacter pseudethanolicus
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Acetoanaerobium sticklandii
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Clostridioides difficile
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Cutibacterium acnes
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Alkaliphilus metalliredigens
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Alkaliphilus oremlandii
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Fervidobacterium nodosum Rt17-B1
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Petrotoga mobilis
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Thermoanaerobacter pseudethanolicus
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Natranaerobius thermophilus
oraS gene name, one of the two subunits, gene is in synteny with further genes of the ornithine fermentation pathway: or-1, or-2, or-4, oraS, oraE, or-4, or-5 Thermosipho melanesiensis

General Information

General Information Comment Organism
metabolism catalyzes step 2 in the ornithine fermentation pathway Acetoanaerobium sticklandii
metabolism catalyzes step 2 in the ornithine fermentation pathway Clostridioides difficile
metabolism catalyzes step 2 in the ornithine fermentation pathway Cutibacterium acnes
metabolism catalyzes step 2 in the ornithine fermentation pathway Alkaliphilus metalliredigens
metabolism catalyzes step 2 in the ornithine fermentation pathway Alkaliphilus oremlandii
metabolism catalyzes step 2 in the ornithine fermentation pathway Fervidobacterium nodosum Rt17-B1
metabolism catalyzes step 2 in the ornithine fermentation pathway Petrotoga mobilis
metabolism catalyzes step 2 in the ornithine fermentation pathway Thermoanaerobacter pseudethanolicus
metabolism catalyzes step 2 in the ornithine fermentation pathway Natranaerobius thermophilus
metabolism catalyzes step 2 in the ornithine fermentation pathway Thermosipho melanesiensis