Literature summary for 5.1.1.4 extracted from

Caballero, Z.C.; Costa-Martins, A.G.; Ferreira, R.C.; P Alves, J.M.; Serrano, M.G.; Camargo, E.P.; Buck, G.A.; Minoprio, P.; G Teixeira, M.M.
Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences (2015), Parasit. Vectors, 8, 222 .

Cloned(Commentary)

Cloned (Comment)	Organism
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma dionisii
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma cruzi
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma vivax
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma lewisi
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma conorhini
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma serpentis
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma sp. TCC339
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma sp.
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma sp. TCC878
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma cruzi marinkellei
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma erneyi
DNA and amino acid sequence determination and analysis, sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma grayi
DNA and amino acid sequence determination and analysis, sequence comparisons and sequence comparisons and phylogenetic analysis, genotyping and genetic organization, detailed overview	Trypanosoma rangeli

Organism

Organism	UniProt	Comment	Textmining
no activity in Trypanosoma brucei	-	-	-
no activity in Trypanosoma congolense	-	-	-
Trypanosoma conorhini	A0A0F6YF18	-	-
Trypanosoma conorhini TCC025	A0A0F6YF18	-	-
Trypanosoma cruzi	Q4DA80	proline racemase A	-
Trypanosoma cruzi	Q868H8	proline racemase B	-
Trypanosoma cruzi CL Brener	Q4DA80	proline racemase A	-
Trypanosoma cruzi CL Brener	Q868H8	proline racemase B	-
Trypanosoma cruzi marinkellei	A0A0F6VXD6	-	-
Trypanosoma cruzi marinkellei TCC344	A0A0F6VXD6	-	-
Trypanosoma dionisii	-	-	-
Trypanosoma dionisii TCC211	-	-	-
Trypanosoma erneyi	A0A0F6VXE2	-	-
Trypanosoma erneyi TCC1946	A0A0F6VXE2	-	-
Trypanosoma grayi	-	-	-
Trypanosoma grayi ANR4	-	-	-
Trypanosoma lewisi	A0A0F6VXM2	-	-
Trypanosoma lewisi TCC034	A0A0F6VXM2	-	-
Trypanosoma rangeli	-	-	-
Trypanosoma serpentis	A0A0F6SCP6	-	-
Trypanosoma serpentis TCC1052	A0A0F6SCP6	-	-
Trypanosoma sp.	A0A0F6VXD9	-	-
Trypanosoma sp. TCC1825 / RCF-2014	A0A0F6VXD9	-	-
Trypanosoma sp. TCC339	A0A0F6YER1	-	-
Trypanosoma sp. TCC878	A0A0F6VXE6	-	-
Trypanosoma sp. TCC878 RCF-2014	A0A0F6VXE6	-	-
Trypanosoma vivax	B8LFE4	-	-
Trypanosoma vivax Y486	B8LFE4	-	-

Synonyms

Synonyms	Comment	Organism
PA45-A	-	Trypanosoma cruzi
PA45-B	-	Trypanosoma cruzi
PRAC	-	Trypanosoma dionisii
PRAC	-	Trypanosoma cruzi
PRAC	-	Trypanosoma rangeli
PRAC	-	Trypanosoma vivax
PRAC	-	Trypanosoma lewisi
PRAC	-	Trypanosoma conorhini
PRAC	-	Trypanosoma serpentis
PRAC	-	Trypanosoma sp. TCC339
PRAC	-	Trypanosoma sp.
PRAC	-	Trypanosoma sp. TCC878
PRAC	-	Trypanosoma cruzi marinkellei
PRAC	-	Trypanosoma erneyi
PRAC	-	Trypanosoma grayi
PRAC1	-	Trypanosoma vivax
proline racemase A	-	Trypanosoma cruzi
proline racemase B	-	Trypanosoma cruzi
TcPRAC	-	Trypanosoma cruzi
Tgr.146.1080	locus name	Trypanosoma grayi
TryPRAC	-	Trypanosoma dionisii
TryPRAC	-	Trypanosoma cruzi
TryPRAC	-	Trypanosoma rangeli
TryPRAC	-	Trypanosoma vivax
TryPRAC	-	Trypanosoma lewisi
TryPRAC	-	Trypanosoma conorhini
TryPRAC	-	Trypanosoma serpentis
TryPRAC	-	Trypanosoma sp. TCC339
TryPRAC	-	Trypanosoma sp.
TryPRAC	-	Trypanosoma sp. TCC878
TryPRAC	-	Trypanosoma cruzi marinkellei
TryPRAC	-	Trypanosoma erneyi
TryPRAC	-	Trypanosoma grayi
TvPRAC	-	Trypanosoma vivax

General Information

General Information	Comment	Organism
evolution	phylogenetic and syntenic data support a single horizontal transfer to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma vivax
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma dionisii
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma cruzi
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma rangeli
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma lewisi
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma conorhini
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma serpentis
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma sp. TCC339
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma sp.
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma sp. TCC878
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma cruzi marinkellei
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma erneyi
evolution	phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. TryPRAC homologues as single copy genes per haploid genome in 12 of 15 Trypanosoma species, including Trypanosoma cruzi and Trypanosoma cruzi marinkellei, Trypanosoma dionisii, Trypanosoma erneyi, Trypanosoma rangeli, Trypanosoma conorhini and Trypanosoma lewisi, all parasites of mammals. Polymorphisms in TcPRAC genes match Trypanosoma cruzi genotypes: TcI-TcIV and Tcbat have unique genes, while the hybrids TcV and TcVI contain TcPRACA and TcPRACB from parental TcII and TcIII, respectively. PRAC homologues are identified in trypanosomes from anurans, snakes, crocodiles, lizards, and birds. Most trypanosomes have intact PRAC genes. Trypanosoma rangeli possesses only pseudogenes, maybe in the process of being lost. Trypanosoma brucei, Trypanosoma congolense and their allied species, except the more distantly related Trypanosoma vivax, have completely lost PRAC genes. The genealogy of TryPRAC homologs supports an evolutionary history congruent with the Trypanosoma phylogeny	Trypanosoma grayi