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Literature summary for 4.2.3.B17 extracted from

  • Noel, J.P.; Dellas, N.; Faraldos, J.A.; Zhao, M.; Hess, B.A.; Smentek, L.; Coates, R.M.; OMaille, P.E.
    Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates (2010), ACS Chem. Biol., 5, 377-392.
    View publication on PubMedView publication on EuropePMC

Crystallization (Commentary)

Crystallization (Comment) Organism
hanging drop method, crystallographic analyses of wild-type enzyme and a promiscuous mutant, with unreactive 2-fluoro analogues ((2E,6E)-2-fluorofarnesyl diphosphate and (2Z,6E)-2-fluorofarnesyl diphosphate) of (2E,6E)- and (2Z,6E)-farnesyl diphosphate reveals catalytically relevant binding modes and distinct farnesyl chain topologies that are consistent with preorganization by the active-site for cisoid or transoid cyclization Nicotiana tabacum

KM Value [mM]

KM Value [mM] KM Value Maximum [mM] Substrate Comment Organism Structure
0.00797
-
(2Z,6E)-farnesyl diphosphate pH 7.5, 22°C, promiscuous mutant enzyme M4 Nicotiana tabacum
0.01403
-
(2Z,6E)-farnesyl diphosphate pH 7.5, 22°C, wild-type enzyme Nicotiana tabacum

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
(2Z,6E)-farnesyl diphosphate Nicotiana tabacum
-
(+)-2-epi-prezizaene + diphosphate
-
?

Organism

Organism UniProt Comment Textmining
Nicotiana tabacum
-
-
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
(2Z,6E)-farnesyl diphosphate
-
Nicotiana tabacum (+)-2-epi-prezizaene + diphosphate
-
?

Turnover Number [1/s]

Turnover Number Minimum [1/s] Turnover Number Maximum [1/s] Substrate Comment Organism Structure
0.077
-
(2Z,6E)-farnesyl diphosphate pH 7.5, 22°C, promiscuous mutant enzyme M4 Nicotiana tabacum
0.095
-
(2Z,6E)-farnesyl diphosphate pH 7.5, 22°C, wild-type enzyme Nicotiana tabacum

kcat/KM [mM/s]

kcat/KM Value [1/mMs-1] kcat/KM Value Maximum [1/mMs-1] Substrate Comment Organism Structure
6.77
-
(2Z,6E)-farnesyl diphosphate pH 7.5, 22°C, wild-type enzyme Nicotiana tabacum
9.66
-
(2Z,6E)-farnesyl diphosphate pH 7.5, 22°C, promiscuous mutant enzyme M4 Nicotiana tabacum