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Literature summary for 4.1.1.8 extracted from
- Oxalate-degrading bacteria of the human gut as probiotics in the management of kidney stone disease (2010), Adv. Appl. Microbiol., 72, 63-87.
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Bifidobacterium animalis subsp. lactis | - |
- |
- |
| Bifidobacterium dentium | - |
- |
- |
| Bifidobacterium dentium ATCC 27678 | - |
- |
- |
| Bifidobacterium gallicum | D1NS77 | - |
- |
| Bifidobacterium gallicum DSM 20093 | D1NS77 | - |
- |
| Bradyrhizobium japonicum ORS278 | A4YXN1 | - |
- |
| Bradyrhizobium sp. | A4YXN1 | - |
- |
| Eggerthella lenta | - |
- |
- |
| Enterococcus faecalis | - |
- |
- |
| Escherichia coli | - |
- |
- |
| Escherichia coli ATCC 8739 | - |
- |
- |
| Lactobacillus acidophilus | A4PE17 | - |
- |
| Lactobacillus acidophilus ATCC 4796 | A4PE17 | - |
- |
| Lactobacillus gasseri | - |
- |
- |
| Lactobacillus gasseri Gasser AM63 | - |
- |
- |
| Lactobacillus johnsonii | C2E3B5 | - |
- |
| Lactobacillus johnsonii ATCC 33200 | C2E3B5 | - |
- |
| Limosilactobacillus reuteri | - |
- |
- |
| Limosilactobacillus reuteri 100-23 | - |
- |
- |
| Oxalobacter formigenes | C3XBB9 | - |
- |
| Oxalobacter formigenes OXCC13 | C3XBB9 | - |
- |
| Paraburkholderia phytofirmans | B2T9D2 | - |
- |
| Paraburkholderia phytofirmans PsJN | B2T9D2 | - |
- |
| Providencia rettgeri | D4C4C5 | - |
- |
| Providencia rettgeri DSM 1131 | D4C4C5 | - |
- |
| Shigella boydii | Q31Y98 | - |
- |
| Shigella boydii Sb 227 | Q31Y98 | - |
- |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| Oxalyl-CoA | - |
Escherichia coli | Formyl-CoA + CO2 | - |
? |  |
| Oxalyl-CoA | - |
Enterococcus faecalis | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bifidobacterium dentium | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Limosilactobacillus reuteri | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Lactobacillus gasseri | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Eggerthella lenta | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bifidobacterium animalis subsp. lactis | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Lactobacillus acidophilus | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bifidobacterium gallicum | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Providencia rettgeri | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Paraburkholderia phytofirmans | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Shigella boydii | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Oxalobacter formigenes | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Lactobacillus johnsonii | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bradyrhizobium sp. | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Paraburkholderia phytofirmans PsJN | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Escherichia coli ATCC 8739 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Lactobacillus acidophilus ATCC 4796 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bradyrhizobium japonicum ORS278 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bifidobacterium gallicum DSM 20093 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Limosilactobacillus reuteri 100-23 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Providencia rettgeri DSM 1131 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Oxalobacter formigenes OXCC13 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Lactobacillus gasseri Gasser AM63 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Lactobacillus johnsonii ATCC 33200 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Bifidobacterium dentium ATCC 27678 | Formyl-CoA + CO2 | - |
? | |
| Oxalyl-CoA | - |
Shigella boydii Sb 227 | Formyl-CoA + CO2 | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| OXC | - |
Escherichia coli |
| OXC | - |
Enterococcus faecalis |
| OXC | - |
Bifidobacterium dentium |
| OXC | - |
Limosilactobacillus reuteri |
| OXC | - |
Lactobacillus gasseri |
| OXC | - |
Eggerthella lenta |
| OXC | - |
Bifidobacterium animalis subsp. lactis |
| OXC | - |
Lactobacillus acidophilus |
| OXC | - |
Bifidobacterium gallicum |
| OXC | - |
Providencia rettgeri |
| OXC | - |
Paraburkholderia phytofirmans |
| OXC | - |
Shigella boydii |
| OXC | - |
Oxalobacter formigenes |
| OXC | - |
Lactobacillus johnsonii |
| OXC | - |
Bradyrhizobium sp. |
Cofactor
| Cofactor | Comment | Organism | Structure |
|---|---|---|---|
| thiamine diphosphate | dependent on | Escherichia coli | |
| thiamine diphosphate | dependent on | Enterococcus faecalis | |
| thiamine diphosphate | dependent on | Bifidobacterium dentium | |
| thiamine diphosphate | dependent on | Limosilactobacillus reuteri | |
| thiamine diphosphate | dependent on | Lactobacillus gasseri | |
| thiamine diphosphate | dependent on | Eggerthella lenta | |
| thiamine diphosphate | dependent on | Bifidobacterium animalis subsp. lactis | |
| thiamine diphosphate | dependent on | Lactobacillus acidophilus | |
| thiamine diphosphate | dependent on | Bifidobacterium gallicum | |
| thiamine diphosphate | dependent on | Providencia rettgeri | |
| thiamine diphosphate | dependent on | Paraburkholderia phytofirmans | |
| thiamine diphosphate | dependent on | Shigella boydii | |
| thiamine diphosphate | dependent on | Oxalobacter formigenes | |
| thiamine diphosphate | dependent on | Lactobacillus johnsonii | |
| thiamine diphosphate | dependent on | Bradyrhizobium sp. | |
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Release 2023.1 (January 2023)
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