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Literature summary for 4.1.1.2 extracted from

  • Maekelae, M.R.; Hilden, K.; Lundell, T.K.
    Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi (2010), Appl. Microbiol. Biotechnol., 87, 801-814.
    View publication on PubMed

Application

Application Comment Organism
agriculture control of fungal plant pathogen Pandorea sp.
biotechnology determination of oxalic acid in food and biological samples like urine, plasma, serum, wort and beer Flammulina velutipes
biotechnology determination of oxalic acid in food and biological samples like urine, plasma, serum, wort and beer Flammulina sp.
industry prevention of scaling in pulp and paper industry, depletion of oxalate from beverage Aspergillus niger
industry prevention of scaling in pulp and paper industry, depletion of oxalate from beverage Aspergillus sp.
medicine treatment of hyperoxaluria, urolithiasis, nephrocalcinosis, and depletion of dietary oxalate with enzyme formulation Bacillus subtilis

Metals/Ions

Metals/Ions Comment Organism Structure
Mn2+ required for catalysis Bacillus subtilis
Mn2+ required for catalysis Aspergillus niger
Mn2+ required for catalysis Agaricus bisporus
Mn2+ required for catalysis Trametes versicolor
Mn2+ required for catalysis Flammulina velutipes
Mn2+ required for catalysis Aspergillus sp.
Mn2+ required for catalysis Phanerodontia chrysosporium
Mn2+ required for catalysis Dichomitus squalens
Mn2+ required for catalysis Flammulina sp.
Mn2+ required for catalysis Pandorea sp.

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
104000
-
-
Phanerodontia chrysosporium
104000 110000
-
Dichomitus squalens
110000
-
deglycosylated protein Agaricus bisporus
118000
-
-
Trametes versicolor
118000
-
glycosylated protein Agaricus bisporus
128000
-
-
Flammulina velutipes

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
oxalate + H+ Bacillus subtilis
-
formate + CO2
-
?
oxalate + H+ Aspergillus niger
-
formate + CO2
-
?
oxalate + H+ Agaricus bisporus
-
formate + CO2
-
?
oxalate + H+ Trametes versicolor
-
formate + CO2
-
?
oxalate + H+ Flammulina velutipes
-
formate + CO2
-
?
oxalate + H+ Aspergillus sp.
-
formate + CO2
-
?
oxalate + H+ Phanerodontia chrysosporium
-
formate + CO2
-
?
oxalate + H+ Dichomitus squalens
-
formate + CO2
-
?
oxalate + H+ Flammulina sp.
-
formate + CO2
-
?
oxalate + H+ Pandorea sp.
-
formate + CO2
-
?
oxalate + H+ Pandorea sp. OXJ-11a
-
formate + CO2
-
?
oxalate + H+ Flammulina sp. IJF 140502
-
formate + CO2
-
?

Organism

Organism UniProt Comment Textmining
Agaricus bisporus
-
-
-
Aspergillus niger
-
-
-
Aspergillus sp.
-
-
-
Bacillus subtilis
-
-
-
Dichomitus squalens
-
-
-
Flammulina sp.
-
-
-
Flammulina sp. IJF 140502
-
-
-
Flammulina velutipes
-
-
-
Pandorea sp.
-
-
-
Pandorea sp. OXJ-11a
-
-
-
Phanerodontia chrysosporium
-
-
-
Trametes versicolor
-
-
-

Posttranslational Modification

Posttranslational Modification Comment Organism
glycoprotein
-
Agaricus bisporus

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
oxalate + H+
-
Bacillus subtilis formate + CO2
-
?
oxalate + H+
-
Aspergillus niger formate + CO2
-
?
oxalate + H+
-
Agaricus bisporus formate + CO2
-
?
oxalate + H+
-
Trametes versicolor formate + CO2
-
?
oxalate + H+
-
Flammulina velutipes formate + CO2
-
?
oxalate + H+
-
Aspergillus sp. formate + CO2
-
?
oxalate + H+
-
Phanerodontia chrysosporium formate + CO2
-
?
oxalate + H+
-
Dichomitus squalens formate + CO2
-
?
oxalate + H+
-
Flammulina sp. formate + CO2
-
?
oxalate + H+
-
Pandorea sp. formate + CO2
-
?
oxalate + H+
-
Pandorea sp. OXJ-11a formate + CO2
-
?
oxalate + H+
-
Flammulina sp. IJF 140502 formate + CO2
-
?

Subunits

Subunits Comment Organism
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Bacillus subtilis
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Aspergillus niger
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Agaricus bisporus
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Trametes versicolor
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Flammulina velutipes
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Aspergillus sp.
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Phanerodontia chrysosporium
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Dichomitus squalens
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Flammulina sp.
hexamer functional ODC enzyme is a hexamer comprised of two trimers of the bicupin subunits Pandorea sp.

Synonyms

Synonyms Comment Organism
ODC
-
Bacillus subtilis
ODC
-
Aspergillus niger
ODC
-
Agaricus bisporus
ODC
-
Trametes versicolor
ODC
-
Flammulina velutipes
ODC
-
Aspergillus sp.
ODC
-
Phanerodontia chrysosporium
ODC
-
Dichomitus squalens
ODC
-
Flammulina sp.
ODC
-
Pandorea sp.
oxalate carboxy-lyase
-
Bacillus subtilis
oxalate carboxy-lyase
-
Aspergillus niger
oxalate carboxy-lyase
-
Agaricus bisporus
oxalate carboxy-lyase
-
Trametes versicolor
oxalate carboxy-lyase
-
Flammulina velutipes
oxalate carboxy-lyase
-
Aspergillus sp.
oxalate carboxy-lyase
-
Phanerodontia chrysosporium
oxalate carboxy-lyase
-
Dichomitus squalens
oxalate carboxy-lyase
-
Flammulina sp.
oxalate carboxy-lyase
-
Pandorea sp.
OXDC
-
Bacillus subtilis

Cofactor

Cofactor Comment Organism Structure
O2 required for catalysis Bacillus subtilis
O2 required for catalysis Aspergillus niger
O2 required for catalysis Agaricus bisporus
O2 required for catalysis Trametes versicolor
O2 required for catalysis Flammulina velutipes
O2 required for catalysis Aspergillus sp.
O2 required for catalysis Phanerodontia chrysosporium
O2 required for catalysis Dichomitus squalens
O2 required for catalysis Flammulina sp.
O2 required for catalysis Pandorea sp.

pI Value

Organism Comment pI Value Maximum pI Value
Trametes versicolor the enzyme has two pI-values of 2.3 and 3.0
-
2.3
Flammulina velutipes the enzyme has two pI-values at 2.5 and 3.3
-
2.5
Dichomitus squalens the enzyme has two pI-values at 2.6 and 4.2
-
2.6
Agaricus bisporus the enzyme has two pI-values at 3.0 and 3.4
-
3
Trametes versicolor the enzyme has two pI-values of 2.3 and 3.0
-
3
Flammulina velutipes the enzyme has two pI-values at 2.5 and 3.3
-
3.3
Agaricus bisporus the enzyme has two pI-values at 3.0 and 3.4
-
3.4
Dichomitus squalens the enzyme has two pI-values at 2.6 and 4.2
-
4.2