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Literature summary for 4.1.1.2 extracted from

  • Makela, M.; Galkin, S.; Hatakka, A.; Lundell, T.
    Production of organic acids and oxalate decarboxylase in lignin-degrading white rot fungi (2002), Enzyme Microb. Technol., 30, 542-549.
No PubMed abstract available

Activating Compound

Activating Compound Comment Organism Structure
additional information 6fold higher specific activity after induction by 5 mM oxalic acid, also some non-induced activity Dichomitus squalens
additional information induced by 5 mM oxalic acid Trametes versicolor
additional information induced by 5 mM oxalic acid Trametes ochracea
additional information induced by 5 mM oxalic acid Atheliachaete sanguinea

Localization

Localization Comment Organism GeneOntology No. Textmining
cytoplasm
-
Dichomitus squalens 5737
-
intracellular
-
Trametes versicolor 5622
-
intracellular
-
Trametes ochracea 5622
-
intracellular
-
Atheliachaete sanguinea 5622
-

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
oxalate + H+ Trametes versicolor inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?
oxalate + H+ Dichomitus squalens inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?
oxalate + H+ Trametes ochracea inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?
oxalate + H+ Atheliachaete sanguinea inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?
oxalate + H+ Trametes ochracea T7 inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?
oxalate + H+ Atheliachaete sanguinea T51 inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?
oxalate + H+ Dichomitus squalens PO114 inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae formate + CO2
-
?

Organism

Organism UniProt Comment Textmining
Atheliachaete sanguinea
-
white rot fungus
-
Atheliachaete sanguinea T51
-
white rot fungus
-
Dichomitus squalens
-
white rot fungus
-
Dichomitus squalens PO114
-
white rot fungus
-
no activity in Ceriporiopsis subvermispora
-
white rot fungus
-
no activity in Ceriporiopsis subvermispora CZ-3
-
white rot fungus
-
no activity in Haploporus odorus strain T154
-
white rot fungus
-
no activity in Nematoloma frowardii
-
white rot fungus
-
no activity in Nematoloma frowardii b19
-
white rot fungus
-
no activity in Phanerochaete chrysosporium
-
ATCC 24725, white rot fungus
-
no activity in Phanerochaete chrysosporium F1767
-
ATCC 24725, white rot fungus
-
no activity in Phlebiopsis gigantea
-
white rot fungus
-
no activity in Phlebiopsis gigantea T55
-
white rot fungus
-
no activity in Radulodon erikssonii
-
white rot fungus
-
no activity in Radulodon erikssonii T84
-
white rot fungus
-
no activity in Trichaptum fusco-violaceum
-
white rot fungus
-
no activity in Trichaptum fusco-violaceum T21
-
white rot fungus
-
Trametes ochracea
-
white rot fungus
-
Trametes ochracea T7
-
white rot fungus
-
Trametes versicolor
-
strain R/7, i.e. ATCC 44308, no activity in strain PRL 572, white rot fungus
-

Specific Activity [micromol/min/mg]

Specific Activity Minimum [µmol/min/mg] Specific Activity Maximum [µmol/min/mg] Comment Organism
additional information
-
no activity detectable without induction by oxalic acid Trametes versicolor
additional information
-
no activity detectable without induction by oxalic acid Trametes ochracea
additional information
-
very low activity without induction by oxalic acid Atheliachaete sanguinea
9
-
induced specific activity by 5 mM oxalic acid Trametes ochracea
14
-
non-induced specific activity, growth without oxalic acid Dichomitus squalens
15
-
induced specific activity by 5 mM oxalic acid Atheliachaete sanguinea
41
-
strain R/7, induced specific activity by 5 mM oxalic acid Trametes versicolor
86
-
induced specific activity by 5 mM oxalic acid Dichomitus squalens

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
oxalate + H+
-
Trametes versicolor formate + CO2
-
?
oxalate + H+
-
Dichomitus squalens formate + CO2
-
?
oxalate + H+
-
Trametes ochracea formate + CO2
-
?
oxalate + H+
-
Atheliachaete sanguinea formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Trametes versicolor formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Dichomitus squalens formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Trametes ochracea formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Atheliachaete sanguinea formate + CO2
-
?
oxalate + H+
-
Trametes ochracea T7 formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Trametes ochracea T7 formate + CO2
-
?
oxalate + H+
-
Atheliachaete sanguinea T51 formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Atheliachaete sanguinea T51 formate + CO2
-
?
oxalate + H+
-
Dichomitus squalens PO114 formate + CO2
-
?
oxalate + H+ inducible enzyme, key role in regulating the level of oxalate concentrations inside the fungal cells and in the vicinity of the fungal hyphae Dichomitus squalens PO114 formate + CO2
-
?

Synonyms

Synonyms Comment Organism
ODC
-
Trametes versicolor
ODC
-
Dichomitus squalens
ODC
-
Trametes ochracea
ODC
-
no activity in Phanerochaete chrysosporium
ODC
-
no activity in Phlebiopsis gigantea
ODC
-
no activity in Radulodon erikssonii
ODC
-
no activity in Trichaptum fusco-violaceum
ODC
-
Atheliachaete sanguinea
ODC
-
no activity in Ceriporiopsis subvermispora
ODC
-
no activity in Haploporus odorus strain T154
ODC
-
no activity in Nematoloma frowardii