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Literature summary for 3.8.1.5 extracted from
- Compositional profile of alpha/beta-hydrolase fold proteins in mangrove soil metagenomes: Prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites (2015), Microb. Biotechnol., 8, 604-613.
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Photobacterium profundum |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Mycobacterium marinum |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Moritella sp. |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Alcanivorax borkumensis |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Mycolicibacterium vanbaalenii |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Salinispora arenicola |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Chloroflexus sp. |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Anaeromyxobacter sp. K |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Oceanicaulis alexandrii |
| genotyping, DNA and amino acid sequence determination and analysis, analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils | Aeromicrobium marinum |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Aeromicrobium marinum | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Alcanivorax borkumensis | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Anaeromyxobacter sp. K | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Chloroflexus sp. | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Moritella sp. | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Mycobacterium marinum | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Mycolicibacterium vanbaalenii | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Oceanicaulis alexandrii | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Photobacterium profundum | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
| Salinispora arenicola | - |
isolated from mangrove soil from two sites in the same mangrove separated by a small stream affected by oil contamination (petroleum), Brazil | - |
General Information
| General Information | Comment | Organism |
|---|---|---|
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Photobacterium profundum |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Mycobacterium marinum |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Moritella sp. |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Alcanivorax borkumensis |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Mycolicibacterium vanbaalenii |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Salinispora arenicola |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Chloroflexus sp. |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Anaeromyxobacter sp. K |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Oceanicaulis alexandrii |
| additional information | analysis of the composition and diversity of metagenomic sequences encoding alpha/beta-hydrolase fold proteins in four distinct mangrove soils, haloalkane dehalogenases are only found in soil sample from one site, overview | Aeromicrobium marinum |
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