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Literature summary for 3.8.1.5 extracted from

  • Koudelakova, T.; Chovancova, E.; Brezovsky, J.; Monincova, M.; Fortova, A.; Jarkovsky, J.; Damborsky, J.
    Substrate specificity of haloalkane dehalogenases (2011), Biochem. J., 435, 345-354.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
gene datA, phylogenetic analysis Agrobacterium tumefaciens
gene dbeA, phylogenetic analysis Bradyrhizobium elkanii
gene dbjA, phylogenetic analysis Bradyrhizobium japonicum
gene dhaA, phylogenetic analysis Rhodococcus rhodochrous
gene dhlA, phylogenetic analysis Xanthobacter autotrophicus
gene drbA, phylogenetic analysis Rhodopirellula baltica
gene linB, phylogenetic analysis Sphingobium indicum
genes dmbA and dmbC, phylogenetic analysis Mycobacterium tuberculosis variant bovis

Organism

Organism UniProt Comment Textmining
Agrobacterium tumefaciens
-
gene datA
-
Agrobacterium tumefaciens C58 / ATCC 33970
-
gene datA
-
Bradyrhizobium elkanii
-
gene dbeA
-
Bradyrhizobium elkanii USDA94
-
gene dbeA
-
Bradyrhizobium japonicum
-
gene dbjA
-
Bradyrhizobium japonicum USDA 110
-
gene dbjA
-
Mycobacterium tuberculosis variant bovis
-
genes dmbA and dmbC
-
Mycobacterium tuberculosis variant bovis 5033/66
-
genes dmbA and dmbC
-
Rhodococcus rhodochrous
-
gene dhaA
-
Rhodococcus rhodochrous NCIMB 13064
-
gene dhaA
-
Rhodopirellula baltica
-
gene drbA
-
Rhodopirellula baltica SH1
-
gene drbA
-
Sphingobium indicum
-
gene linB
-
Sphingobium indicum UT26
-
gene linB
-
Xanthobacter autotrophicus
-
gene dhlA
-
Xanthobacter autotrophicus GJ10
-
gene dhlA
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
1,2,3-trichloropropane + H2O
-
Bradyrhizobium japonicum ?
-
?
1,2,3-trichloropropane + H2O
-
Bradyrhizobium japonicum USDA 110 ?
-
?
1,2-dichloroethane + H2O high activity Xanthobacter autotrophicus ?
-
?
1,2-dichloroethane + H2O high activity Xanthobacter autotrophicus GJ10 ?
-
?
1,2-dichloropropane + H2O
-
Bradyrhizobium japonicum ?
-
?
1,2-dichloropropane + H2O
-
Bradyrhizobium japonicum USDA 110 ?
-
?
1,3-dichloropropane + H2O high activity Xanthobacter autotrophicus ?
-
?
1,3-dichloropropane + H2O high activity Xanthobacter autotrophicus GJ10 ?
-
?
1-chloro-2-(2-chloroethoxy)ethane + H2O
-
Mycobacterium tuberculosis variant bovis ?
-
?
1-chloro-2-(2-chloroethoxy)ethane + H2O
-
Mycobacterium tuberculosis variant bovis 5033/66 ?
-
?
1-chlorobutane + H2O
-
Bradyrhizobium japonicum 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Rhodococcus rhodochrous 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Agrobacterium tumefaciens 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Mycobacterium tuberculosis variant bovis 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Xanthobacter autotrophicus 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Sphingobium indicum 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Rhodopirellula baltica 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Bradyrhizobium elkanii 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Bradyrhizobium japonicum USDA 110 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Agrobacterium tumefaciens C58 / ATCC 33970 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Rhodococcus rhodochrous NCIMB 13064 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Bradyrhizobium elkanii USDA94 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Rhodopirellula baltica SH1 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Xanthobacter autotrophicus GJ10 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Sphingobium indicum UT26 1-butanol + chloride
-
?
1-chlorobutane + H2O
-
Mycobacterium tuberculosis variant bovis 5033/66 1-butanol + chloride
-
?
1-iodobutane + H2O
-
Bradyrhizobium japonicum 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Rhodococcus rhodochrous 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Agrobacterium tumefaciens 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Mycobacterium tuberculosis variant bovis 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Xanthobacter autotrophicus 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Sphingobium indicum 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Rhodopirellula baltica 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Bradyrhizobium elkanii 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Bradyrhizobium japonicum USDA 110 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Agrobacterium tumefaciens C58 / ATCC 33970 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Rhodococcus rhodochrous NCIMB 13064 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Bradyrhizobium elkanii USDA94 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Rhodopirellula baltica SH1 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Xanthobacter autotrophicus GJ10 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Sphingobium indicum UT26 1-butanol + iodide
-
?
1-iodobutane + H2O
-
Mycobacterium tuberculosis variant bovis 5033/66 1-butanol + iodide
-
?
2-bromo-1-chloropropane + H2O high activity Bradyrhizobium japonicum ?
-
?
2-iodobutane + H2O
-
Mycobacterium tuberculosis variant bovis 2-butanol + iodide
-
?
2-iodobutane + H2O
-
Mycobacterium tuberculosis variant bovis 5033/66 2-butanol + iodide
-
?
chlorocyclopentane + H2O high activity Bradyrhizobium japonicum cyclopentanol + chloride
-
?
chlorocyclopentane + H2O
-
Mycobacterium tuberculosis variant bovis hydroxycyclopentane + chloride
-
?
additional information substrate specificity, overview Bradyrhizobium japonicum ?
-
?
additional information substrate specificity, overview Rhodococcus rhodochrous ?
-
?
additional information substrate specificity, overview Agrobacterium tumefaciens ?
-
?
additional information substrate specificity, overview Mycobacterium tuberculosis variant bovis ?
-
?
additional information substrate specificity, overview Xanthobacter autotrophicus ?
-
?
additional information substrate specificity, overview Sphingobium indicum ?
-
?
additional information substrate specificity, overview Rhodopirellula baltica ?
-
?
additional information substrate specificity, overview Bradyrhizobium elkanii ?
-
?
additional information substrate specificity, overview Bradyrhizobium japonicum USDA 110 ?
-
?
additional information substrate specificity, overview Agrobacterium tumefaciens C58 / ATCC 33970 ?
-
?
additional information substrate specificity, overview Rhodococcus rhodochrous NCIMB 13064 ?
-
?
additional information substrate specificity, overview Bradyrhizobium elkanii USDA94 ?
-
?
additional information substrate specificity, overview Rhodopirellula baltica SH1 ?
-
?
additional information substrate specificity, overview Xanthobacter autotrophicus GJ10 ?
-
?
additional information substrate specificity, overview Sphingobium indicum UT26 ?
-
?
additional information substrate specificity, overview Mycobacterium tuberculosis variant bovis 5033/66 ?
-
?

Synonyms

Synonyms Comment Organism
DatA
-
Agrobacterium tumefaciens
DbeA
-
Bradyrhizobium elkanii
DbjA
-
Bradyrhizobium japonicum
DhaA
-
Rhodococcus rhodochrous
DhlA
-
Xanthobacter autotrophicus
dmbA
-
Mycobacterium tuberculosis variant bovis
DmbC
-
Mycobacterium tuberculosis variant bovis
DrbA
-
Rhodopirellula baltica
HLD
-
Bradyrhizobium japonicum
HLD
-
Rhodococcus rhodochrous
HLD
-
Agrobacterium tumefaciens
HLD
-
Mycobacterium tuberculosis variant bovis
HLD
-
Xanthobacter autotrophicus
HLD
-
Sphingobium indicum
HLD
-
Rhodopirellula baltica
HLD
-
Bradyrhizobium elkanii
LinB
-
Sphingobium indicum

Temperature Optimum [°C]

Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
37
-
assay at Bradyrhizobium japonicum
37
-
assay at Rhodococcus rhodochrous
37
-
assay at Agrobacterium tumefaciens
37
-
assay at Mycobacterium tuberculosis variant bovis
37
-
assay at Xanthobacter autotrophicus
37
-
assay at Sphingobium indicum
37
-
assay at Rhodopirellula baltica
37
-
assay at Bradyrhizobium elkanii

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
8.6
-
assay at Bradyrhizobium japonicum
8.6
-
assay at Rhodococcus rhodochrous
8.6
-
assay at Agrobacterium tumefaciens
8.6
-
assay at Mycobacterium tuberculosis variant bovis
8.6
-
assay at Xanthobacter autotrophicus
8.6
-
assay at Sphingobium indicum
8.6
-
assay at Rhodopirellula baltica
8.6
-
assay at Bradyrhizobium elkanii

General Information

General Information Comment Organism
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Bradyrhizobium japonicum
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Rhodococcus rhodochrous
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Agrobacterium tumefaciens
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Mycobacterium tuberculosis variant bovis
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Xanthobacter autotrophicus
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Sphingobium indicum
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Rhodopirellula baltica
evolution comparison and classification of the substrate specificities of nine members of the HLD family, functional classification compared with one derived on the basis of the enzymes' evolutionary relationships, overview Bradyrhizobium elkanii