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Literature summary for 3.6.4.6 extracted from

  • Haas, T.J.; Sliwinski, M.K.; Martinez, D.E.; Preuss, M.; Ebine, K.; Ueda, T.; Nielsen, E.; Odorizzi, G.; Otegui, M.S.
    The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator lyst-interacting protein5 (2007), Plant Cell, 19, 1295-1312.
    View publication on PubMedView publication on EuropePMC

Activating Compound

Activating Compound Comment Organism Structure
LIP5
-
Arabidopsis thaliana

Cloned(Commentary)

Cloned (Comment) Organism
SKD1 and GFP5 PCR-amplified fragments are cloned in pBSII KS+ and subsequently subcloned into pMZ215S, and in the binary vectors pCambia 1300 and pbinSRNACatN Arabidopsis thaliana

Protein Variants

Protein Variants Comment Organism
E232Q ATPase-deficient mutant Arabidopsis thaliana

Localization

Localization Comment Organism GeneOntology No. Textmining
cytoplasm
-
Arabidopsis thaliana 5737
-
endosome multivesicular endosome Arabidopsis thaliana 5768
-
multivesicular body
-
Arabidopsis thaliana 5771
-

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
48500
-
predicted molecular mass Arabidopsis thaliana
50000
-
recombinant protein, determined by SDS-PAGE and immunoblot analysis Arabidopsis thaliana

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
ATP + H2O Arabidopsis thaliana
-
ADP + phosphate
-
ir

Organism

Organism UniProt Comment Textmining
Arabidopsis thaliana
-
-
-

Source Tissue

Source Tissue Comment Organism Textmining
flower
-
Arabidopsis thaliana
-
leaf
-
Arabidopsis thaliana
-
root
-
Arabidopsis thaliana
-
seed
-
Arabidopsis thaliana
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
ATP + H2O
-
Arabidopsis thaliana ADP + phosphate
-
ir

Synonyms

Synonyms Comment Organism
SKD1
-
Arabidopsis thaliana

Temperature Optimum [°C]

Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
21
-
ATPase activity assay Arabidopsis thaliana

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
7.4
-
ATPase activity assay Arabidopsis thaliana