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Literature summary for 3.1.7.1 extracted from
- Partial characterization of farnesyl and geranylgeranyl diphosphatases induced in rice seedlings by UV-C irradiation (2001), Plant Cell Physiol., 42, 864-867.
Activating Compound
| Activating Compound | Comment | Organism | Structure |
|---|---|---|---|
| additional information | FDPase and GGDPase are induced in rice seedlings irradiated with UV-C | Oryza sativa |
Inhibitors
| Inhibitors | Comment | Organism | Structure |
|---|---|---|---|
| farnesyl diphosphate | GGDPase activity, 0.1 mM, 50% inhibition | Oryza sativa |  |
| geranyl diphosphate | FDPase activity, 0.1 mM, 50% inhibition, no inhibition of GGDPase | Oryza sativa | |
| geranylgeranyl diphosphate | FDPase activity, 0.005 mM, 50% inhibition | Oryza sativa | |
| isopentenyl diphosphate | GGDPase activity, 0.05 mM, 50% inhibition | Oryza sativa | |
Localization
| Localization | Comment | Organism | GeneOntology No. | Textmining |
|---|---|---|---|---|
| microsome | FDPase and GGDPase | Oryza sativa | - |
- |
| additional information | not in the cytoplasm | Oryza sativa | - |
- |
Metals/Ions
| Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|
| additional information | FDPase and GGDPase are both Mg2+-independent | Oryza sativa |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| additional information | Oryza sativa | isoprenoid pathway, FDPase may play an important role in regulating the isoprenoid biosynthetic pathway in cells exposed to UV-C radiation | ? | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Oryza sativa | - |
cv. Nakdong | - |
Source Tissue
| Source Tissue | Comment | Organism | Textmining |
|---|---|---|---|
| seedling | - |
Oryza sativa | - |
Specific Activity [micromol/min/mg]
| Specific Activity Minimum [µmol/min/mg] | Specific Activity Maximum [µmol/min/mg] | Comment | Organism |
|---|---|---|---|
| additional information | - |
the relative specific activity of FDPase is much higher than the specific activity of GGDPase | Oryza sativa |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| farnesyl diphosphate + H2O | FDPase | Oryza sativa | farnesol + diphosphate | - |
? | |
| geranylgeranyl diphosphate + H2O | GGDPase | Oryza sativa | geranylgeraniol + diphosphate | - |
? | |
| additional information | isoprenoid pathway, FDPase may play an important role in regulating the isoprenoid biosynthetic pathway in cells exposed to UV-C radiation | Oryza sativa | ? | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| allyl diphosphatase | - |
Oryza sativa |
| farnesyl diphosphatase | - |
Oryza sativa |
| FDPase | - |
Oryza sativa |
| geranylgeranyl diphosphatase | - |
Oryza sativa |
| GGDPase | - |
Oryza sativa |
| More | FDPase and GGDPase are two distinct allyl diphosphatases specifically hydrolyzing farnesyl diphosphate and geranylgeranyl diphosphate, respectively | Oryza sativa |
Temperature Optimum [°C]
| Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
|---|---|---|---|
| 35 | - |
assay at | Oryza sativa |
pH Optimum
| pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
|---|---|---|---|
| 6.8 | - |
FDPase | Oryza sativa |
| 7.9 | - |
GGDPase | Oryza sativa |
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