Literature summary for 3.1.21.4 extracted from

Nikolajewa, S.; Beyer, A.; Friedel, M.; Hollunder, J.; Wilhelm, T.
Common patterns in type II restriction enzyme binding sites (2005), Nucleic Acids Res., 33, 2726-2733.

Search for more literature for 3.1.21.4

Organism

Organism	UniProt	Comment	Textmining
Bacillus amyloliquefaciens	-	-	-
Bacillus subtilis	-	-	-
Citrobacter freundii	-	-	-
Escherichia coli	-	-	-
Geobacillus stearothermophilus	-	-	-
Haemophilus influenzae	-	-	-
Lentzea aerocolonigenes	-	-	-
Moraxella sp.	-	-	-
Mycoplasma sp.	-	-	-
Neisseria gonorrhoeae	-	-	-
Planomicrobium okeanokoites	-	-	-
Proteus vulgaris	-	-	-

Substrates and Products (Substrate)

Substrates	Comment Substrates	Organism	Products	Comment (Products)	Rev.	Reac.
DNA + H2O	recognition sequence of BstYI: GATATC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Escherichia coli	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of Cfr10I: RCCGGY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Citrobacter freundii	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of NaeI: GCCGGC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Lentzea aerocolonigenes	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of NgoMIV: GCCGGC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Neisseria gonorrhoeae	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of HincII: GTYRAC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Haemophilus influenzae	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of Bse634I: RCCGGY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Geobacillus stearothermophilus	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of MunI: CAATTG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Mycoplasma sp.	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of PvuII: CAGCTG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Proteus vulgaris	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of BsoBI: CYCGRG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Geobacillus stearothermophilus	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of EcoO109I: RGGNCCY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Escherichia coli	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of MspI: CCGG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Moraxella sp.	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of BgII: GCCNNNNNGGC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Bacillus subtilis	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of FokI: GGATG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Planomicrobium okeanokoites	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of EcoRII: CCWGG. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Escherichia coli	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of EcoRI: GAATTC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Escherichia coli	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of BamHI: GGATCC. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Bacillus amyloliquefaciens	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of HindIII: AAGCTT. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Haemophilus influenzae	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of BglII: AGATCT. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Bacillus subtilis	double-stranded DNA fragments with terminal 5'-phosphates	-	?
DNA + H2O	recognition sequence of BstYI: RGATCY. Recognition sites of type II restriction enzymes are underrepresented in host genomes and in phage genomes	Geobacillus stearothermophilus	double-stranded DNA fragments with terminal 5'-phosphates	-	?

Synonyms

Synonyms	Comment	Organism
BamHI	-	Bacillus amyloliquefaciens
BgII	-	Bacillus subtilis
BglII	-	Bacillus subtilis
Bse634I	-	Geobacillus stearothermophilus
BsoBI	-	Geobacillus stearothermophilus
BstYI	-	Geobacillus stearothermophilus
Cfr10I	-	Citrobacter freundii
EcoO109I	-	Escherichia coli
EcoRI	-	Escherichia coli
EcoRII	-	Escherichia coli
EcoRV	-	Escherichia coli
FokI	-	Planomicrobium okeanokoites
HincII	-	Haemophilus influenzae
HindIII	-	Haemophilus influenzae
MspI	-	Moraxella sp.
MunI	-	Mycoplasma sp.
NaeI	-	Lentzea aerocolonigenes
NgoMIV	-	Neisseria gonorrhoeae
PvuII	-	Proteus vulgaris

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Release 2026.1 (March 2026)