BRENDA - Enzyme Database show
show all sequences of 3.1.1.76

Studies on the biodegradability of polythioester copolymers and homopolymers by polyhydroxyalkanoate (PHA)-degrading bacteria and PHA depolymerase

Elbanna, K.; Lütke-Eversloh, T.; Jendrossek, D.; Luftmann, H.; Steinbüchel, A.; Arch. Microbiol. 182, 212-225 (2004)

Data extracted from this reference:

Inhibitors
Inhibitors
Commentary
Organism
Structure
2-mercaptoethanol
complete inhibition
Schlegelella thermodepolymerans
4-hydroxymercuribenzoate
-
Pseudomonas indica
4-hydroxymercuribenzoate
complete inhibition
Schlegelella thermodepolymerans
diisopropylfluorophosphate
complete inhibition
Schlegelella thermodepolymerans
dithiothreitol
complete inhibition
Schlegelella thermodepolymerans
DTNB
complete inhibition
Schlegelella thermodepolymerans
EDTA
-
Pseudomonas indica
EDTA
complete inhibition
Schlegelella thermodepolymerans
ethanol
strong inhibition at 10% v/v
Schlegelella thermodepolymerans
iodoacetate
-
Pseudomonas indica
iodoacetate
complete inhibition
Schlegelella thermodepolymerans
KCl
-
Schlegelella thermodepolymerans
additional information
no inhibition by DTT
Pseudomonas indica
n-Propanol
strong inhibition at 10% v/v
Schlegelella thermodepolymerans
NaCl
-
Schlegelella thermodepolymerans
PMSF
40% inhibition 1.0-10 mM
Schlegelella thermodepolymerans
Sodium azide
-
Pseudomonas indica
Sodium azide
complete inhibition
Schlegelella thermodepolymerans
Triton X-100
strong inhibition
Pseudomonas indica
Triton X-100
strong inhibition 0.2-1.0 mM
Schlegelella thermodepolymerans
Tween 20
66% inhibition 2 mM
Schlegelella thermodepolymerans
Tween 80
strong inhibition
Pseudomonas indica
Localization
Localization
Commentary
Organism
GeneOntology No.
Textmining
extracellular
-
Pseudomonas indica
-
-
extracellular
-
Schlegelella thermodepolymerans
-
-
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
28000
-
x * 28000, SDS-PAGE
Schlegelella thermodepolymerans
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Pseudomonas indica
-
-
-
Pseudomonas indica K2 / DSM 16298
-
-
-
Schlegelella thermodepolymerans
-
strain DSM 15344
-
Purification (Commentary)
Commentary
Organism
to homogeneity by ultrafiltration, affinity-based separation, and gel filtration
Pseudomonas indica
to homogeneity by ultrafiltration, heat tretament at 70°C for 30 min, and affinity-based separation
Schlegelella thermodepolymerans
Source Tissue
Source Tissue
Commentary
Organism
Textmining
additional information
the bacterium can grow on poly(3-hydroxybutyrate-co-3-mercaptopropionate) as sole carbon source
Pseudomonas indica
-
additional information
the bacterium can grow on 3-mercaptopropionate or poly(3-hydroxybutyrate-co-3-mercaptopropionate) as sole carbon source
Schlegelella thermodepolymerans
-
Specific Activity [micromol/min/mg]
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
25
-
purified enzyme
Schlegelella thermodepolymerans
26
-
purified enzyme
Pseudomonas indica
Storage Stability
Storage Stability
Organism
-20°C to 70°C, purified enzyme, stable for more than 6 months
Pseudomonas indica
-20°C, purified enzyme, 1 year, 70% remaining activity
Schlegelella thermodepolymerans
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
additional information
substrate specificity, no activity with homopolymers of 3-mercaptopropionate and 3-mercaptobutyrate
663794
Schlegelella thermodepolymerans
?
-
-
-
-
additional information
substrate specificity, no activity with homopolymers of 3-mercaptopropionate and 3-mercaptobutyrate, or the co-polymeric poly(3-hydroxybutyrate-co-3-mercaptopropionate)
663794
Pseudomonas indica
?
-
-
-
-
additional information
substrate specificity, no activity with homopolymers of 3-mercaptopropionate and 3-mercaptobutyrate, or the co-polymeric poly(3-hydroxybutyrate-co-3-mercaptopropionate)
663794
Pseudomonas indica K2 / DSM 16298
?
-
-
-
-
poly(3-hydroxybutyrate-co-3-mercaptopropionate) + H2O
co-polymeric substrate, the activity decreases with increasing amount of 3-mercaptopropionate
663794
Schlegelella thermodepolymerans
?
-
-
-
?
Subunits
Subunits
Commentary
Organism
?
x * 28000, SDS-PAGE
Schlegelella thermodepolymerans
Temperature Optimum [°C]
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
additional information
-
optimal bacterial growth at 30°C
Pseudomonas indica
additional information
-
optimal bacterial growth at 55°C
Schlegelella thermodepolymerans
35
-
-
Pseudomonas indica
75
90
-
Schlegelella thermodepolymerans
Temperature Range [°C]
Temperature Minimum [°C]
Temperature Maximum [°C]
Commentary
Organism
15
50
-
Pseudomonas indica
Temperature Stability [°C]
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
50
-
over 90% remaining activity after 24 h
Schlegelella thermodepolymerans
70
-
69% remaining activity after 24 h
Schlegelella thermodepolymerans
pH Optimum
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
8
-
assay at
Pseudomonas indica
8
-
assay at
Schlegelella thermodepolymerans
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
2-mercaptoethanol
complete inhibition
Schlegelella thermodepolymerans
4-hydroxymercuribenzoate
-
Pseudomonas indica
4-hydroxymercuribenzoate
complete inhibition
Schlegelella thermodepolymerans
diisopropylfluorophosphate
complete inhibition
Schlegelella thermodepolymerans
dithiothreitol
complete inhibition
Schlegelella thermodepolymerans
DTNB
complete inhibition
Schlegelella thermodepolymerans
EDTA
-
Pseudomonas indica
EDTA
complete inhibition
Schlegelella thermodepolymerans
ethanol
strong inhibition at 10% v/v
Schlegelella thermodepolymerans
iodoacetate
-
Pseudomonas indica
iodoacetate
complete inhibition
Schlegelella thermodepolymerans
KCl
-
Schlegelella thermodepolymerans
additional information
no inhibition by DTT
Pseudomonas indica
n-Propanol
strong inhibition at 10% v/v
Schlegelella thermodepolymerans
NaCl
-
Schlegelella thermodepolymerans
PMSF
40% inhibition 1.0-10 mM
Schlegelella thermodepolymerans
Sodium azide
-
Pseudomonas indica
Sodium azide
complete inhibition
Schlegelella thermodepolymerans
Triton X-100
strong inhibition
Pseudomonas indica
Triton X-100
strong inhibition 0.2-1.0 mM
Schlegelella thermodepolymerans
Tween 20
66% inhibition 2 mM
Schlegelella thermodepolymerans
Tween 80
strong inhibition
Pseudomonas indica
Localization (protein specific)
Localization
Commentary
Organism
GeneOntology No.
Textmining
extracellular
-
Pseudomonas indica
-
-
extracellular
-
Schlegelella thermodepolymerans
-
-
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
28000
-
x * 28000, SDS-PAGE
Schlegelella thermodepolymerans
Purification (Commentary) (protein specific)
Commentary
Organism
to homogeneity by ultrafiltration, affinity-based separation, and gel filtration
Pseudomonas indica
to homogeneity by ultrafiltration, heat tretament at 70°C for 30 min, and affinity-based separation
Schlegelella thermodepolymerans
Source Tissue (protein specific)
Source Tissue
Commentary
Organism
Textmining
additional information
the bacterium can grow on poly(3-hydroxybutyrate-co-3-mercaptopropionate) as sole carbon source
Pseudomonas indica
-
additional information
the bacterium can grow on 3-mercaptopropionate or poly(3-hydroxybutyrate-co-3-mercaptopropionate) as sole carbon source
Schlegelella thermodepolymerans
-
Specific Activity [micromol/min/mg] (protein specific)
Specific Activity Minimum [µmol/min/mg]
Specific Activity Maximum [µmol/min/mg]
Commentary
Organism
25
-
purified enzyme
Schlegelella thermodepolymerans
26
-
purified enzyme
Pseudomonas indica
Storage Stability (protein specific)
Storage Stability
Organism
-20°C to 70°C, purified enzyme, stable for more than 6 months
Pseudomonas indica
-20°C, purified enzyme, 1 year, 70% remaining activity
Schlegelella thermodepolymerans
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
additional information
substrate specificity, no activity with homopolymers of 3-mercaptopropionate and 3-mercaptobutyrate
663794
Schlegelella thermodepolymerans
?
-
-
-
-
additional information
substrate specificity, no activity with homopolymers of 3-mercaptopropionate and 3-mercaptobutyrate, or the co-polymeric poly(3-hydroxybutyrate-co-3-mercaptopropionate)
663794
Pseudomonas indica
?
-
-
-
-
additional information
substrate specificity, no activity with homopolymers of 3-mercaptopropionate and 3-mercaptobutyrate, or the co-polymeric poly(3-hydroxybutyrate-co-3-mercaptopropionate)
663794
Pseudomonas indica K2 / DSM 16298
?
-
-
-
-
poly(3-hydroxybutyrate-co-3-mercaptopropionate) + H2O
co-polymeric substrate, the activity decreases with increasing amount of 3-mercaptopropionate
663794
Schlegelella thermodepolymerans
?
-
-
-
?
Subunits (protein specific)
Subunits
Commentary
Organism
?
x * 28000, SDS-PAGE
Schlegelella thermodepolymerans
Temperature Optimum [°C] (protein specific)
Temperature Optimum [°C]
Temperature Optimum Maximum [°C]
Commentary
Organism
additional information
-
optimal bacterial growth at 30°C
Pseudomonas indica
additional information
-
optimal bacterial growth at 55°C
Schlegelella thermodepolymerans
35
-
-
Pseudomonas indica
75
90
-
Schlegelella thermodepolymerans
Temperature Range [°C] (protein specific)
Temperature Minimum [°C]
Temperature Maximum [°C]
Commentary
Organism
15
50
-
Pseudomonas indica
Temperature Stability [°C] (protein specific)
Temperature Stability Minimum [°C]
Temperature Stability Maximum [°C]
Commentary
Organism
50
-
over 90% remaining activity after 24 h
Schlegelella thermodepolymerans
70
-
69% remaining activity after 24 h
Schlegelella thermodepolymerans
pH Optimum (protein specific)
pH Optimum Minimum
pH Optimum Maximum
Commentary
Organism
8
-
assay at
Pseudomonas indica
8
-
assay at
Schlegelella thermodepolymerans
Other publictions for EC 3.1.1.76
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
749659
Heinrich
Synthesis gas (Syngas)-derive ...
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2
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1
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1
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Novel extracellular medium-ch ...
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9605-9615
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3
1
1
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-
-
4
-
1
-
-
-
-
4
-
-
-
-
-
-
1
-
2
1
1
2
2
-
1
1
-
-
-
-
-
3
1
1
-
-
-
-
-
4
-
-
1
-
-
-
-
-
-
-
-
-
1
-
2
1
1
2
2
-
1
1
-
-
-
-
-
-
-
-
751434
Park
-
Establishment of a biosynthes ...
Pseudomonas aeruginosa
Korean J. Chem. Engin.
32
702-706
2015
-
1
1
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
729846
Martinez
Cell system engineering to pro ...
Pseudomonas fluorescens, Pseudomonas fluorescens GK13
Int. J. Biol. Macromol.
71
28-33
2014
-
-
1
-
-
-
-
-
1
-
-
-
-
10
-
-
-
-
-
-
-
-
4
-
1
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
4
-
1
-
-
-
1
-
-
-
-
2
2
-
-
-
729063
Santos
Polyester hydrolytic and synth ...
Streptomyces venezuelae, Streptomyces venezuelae SO1
Appl. Microbiol. Biotechnol.
97
211-222
2013
5
-
-
-
-
-
10
1
1
-
1
-
-
3
-
-
1
-
-
-
1
1
12
1
1
-
4
-
1
1
-
-
-
1
-
5
-
-
-
-
-
-
-
10
-
1
1
-
1
-
-
-
-
1
-
-
1
1
12
1
1
-
4
-
1
1
-
1
-
-
-
-
-
-
729030
Martinez
Identification and biochemical ...
Bdellovibrio bacteriovorus, Bdellovibrio bacteriovorus HD100
Appl. Environ. Microbiol.
78
6017-6026
2012
2
1
1
-
-
-
9
-
1
2
-
4
-
7
-
-
1
-
-
-
1
-
4
-
1
1
-
-
1
1
-
-
-
-
-
2
1
1
-
-
-
-
-
9
-
-
1
2
-
4
-
-
-
1
-
-
1
-
4
-
1
1
-
-
1
1
-
-
-
2
2
-
-
-
729031
Gangoiti
Characterization of a novel su ...
Pseudomonas alcaligenes, Pseudomonas alcaligenes SL1, Pseudomonas fluorescens, Pseudomonas fluorescens GK13, Rhodococcus hoagii, Rhodococcus hoagii W2, Stenotrophomonas maltophilia, Stenotrophomonas maltophilia SL6, Stenotrophomonas maltophilia W1, Streptomyces anulatus, Streptomyces anulatus SL11, Streptomyces atratus, Streptomyces atratus SL2, Streptomyces beijiangensis, Streptomyces beijiangensis SL15, Streptomyces omiyaensis, Streptomyces omiyaensis SO2 CECT 7923, Streptomyces pulveraceus, Streptomyces pulveraceus W3, Streptomyces roseolus, Streptomyces roseolus SL3 CECT 7919, Streptomyces venezuelae, Streptomyces venezuelae SO1 CECT 7920
Appl. Environ. Microbiol.
78
7229-7237
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-
-
3
-
-
-
-
-
11
-
1
54
-
32
-
-
2
-
-
2
-
-
58
1
8
-
-
-
11
1
-
-
-
1
-
-
-
3
-
-
-
-
-
-
-
-
11
-
1
54
-
-
-
2
-
2
-
-
58
1
8
-
-
-
11
1
-
1
-
11
11
-
-
-
729420
Seo
Non-ionic polysorbate surfacta ...
Pseudomonas alcaligenes, Pseudomonas alcaligenes LB19
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121
47-53
2012
-
-
-
-
-
-
-
-
1
-
1
-
-
3
-
-
1
-
-
-
-
-
2
1
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
1
-
-
-
-
1
-
-
-
-
2
1
2
-
-
-
-
-
-
-
1
-
-
1
-
-
715799
Arroyo
Characterization of a novel im ...
Pseudomonas putida, Pseudomonas putida KT 2442
J. Ind. Microbiol. Biotechnol.
38
1203-1209
2011
-
-
1
-
-
-
-
-
2
-
-
2
-
12
-
-
1
-
1
-
-
-
6
-
1
-
1
-
1
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
2
-
-
2
-
-
-
1
1
-
-
-
6
-
1
-
1
-
1
-
-
-
-
-
-
-
-
-
716724
Papaneophytou
-
Purification and characterizat ...
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
Polym. Degrad. Stab.
96
670-678
2011
3
-
-
-
-
-
6
-
1
-
1
4
-
90
-
-
1
-
-
1
-
-
8
1
1
-
-
-
1
1
-
-
-
-
-
3
-
-
-
-
-
-
-
6
-
-
1
-
1
4
-
-
-
1
-
1
-
-
8
1
1
-
-
-
1
1
-
-
-
1
1
-
-
-
713824
Gangoiti
Production of chiral (R)-3-hyd ...
Pseudomonas fluorescens, Pseudomonas fluorescens GK13
Appl. Environ. Microbiol.
76
3554-3560
2010
1
-
-
-
-
-
-
-
1
-
1
2
-
9
-
-
1
-
-
1
2
1
4
1
1
-
1
-
1
1
-
-
-
2
-
1
-
-
-
-
-
-
-
-
-
-
1
-
1
2
-
-
-
1
-
1
2
1
4
1
1
-
1
-
1
1
-
2
-
-
-
-
-
-
714619
Ren
Influence of growth stage on a ...
Pseudomonas putida
BMC Microbiol.
10
254
2010
-
-
-
-
-
-
-
-
1
1
1
1
-
1
-
-
-
-
-
-
-
-
2
1
-
-
-
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
1
1
1
-
-
-
-
-
-
-
-
2
1
-
-
-
-
1
-
-
-
1
-
-
1
-
-
714843
De Eugenio
The turnover of medium-chain-l ...
Pseudomonas putida, Pseudomonas putida KT 2442
Environ. Microbiol.
12
207-221
2010
-
-
-
-
1
-
-
-
-
-
-
2
-
13
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
1
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
2
-
-
-
-
-
-
-
-
-
-
1
1
-
-
-
692388
Yuan
Microbial production of medium ...
Pseudomonas stutzeri 1317, Pseudomonas stutzeri
FEMS Microbiol. Lett.
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2008
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692390
Raiger-Iustman
The alternative sigma factor, ...
Pseudomonas putida, Pseudomonas putida KT 2240
FEMS Microbiol. Lett.
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2008
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677756
Wang
Production of medium-chain-len ...
Pseudomonas putida, Pseudomonas putida GP01
Appl. Microbiol. Biotechnol.
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2007
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680871
de Eugenio
Biochemical evidence that phaZ ...
Pseudomonas putida, Pseudomonas putida KT 2442
J. Biol. Chem.
282
4951-4962
2007
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679540
Rhee
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Characterization of an extrace ...
Pseudomonas luteola, Pseudomonas luteola M13-4
Enzyme Microb. Technol.
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529-535
2006
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665995
Kim
Molecular characterization of ...
Pseudomonas alcaligenes, Pseudomonas alcaligenes LB19, Pseudomonas alcaligenes M4-7
J. Microbiol.
43
285-294
2005
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666689
Hisano
-
Crystal structure of the type ...
Talaromyces funiculosus
Polym. Reprints
46
253-254
2005
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663794
Elbanna
Studies on the biodegradabilit ...
Pseudomonas indica, Pseudomonas indica K2 / DSM 16298, Schlegelella thermodepolymerans
Arch. Microbiol.
182
212-225
2004
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664410
Jiang
Cloning and expression of the ...
Pseudomonas putida, Pseudomonas putida H14
Biotechnol. Lett.
26
1585-1588
2004
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665202
Colak
-
Polyhydroxyalkanoate degrading ...
Pseudomonas aeruginosa, Pseudomonas fluorescens, Pseudomonas putida
Int. Biodeter. Biodegrad.
53
103-109
2004
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663666
Kim
Characterization of an extrace ...
Streptomyces sp., Streptomyces sp. KJ-72
Antonie van Leeuwenhoek
83
183-189
2003
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664292
Kim
Characterization of an extrace ...
Pseudomonas alcaligenes, Pseudomonas alcaligenes LB19
Biomacromolecules
3
291-296
2002
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664294
Wang
Enzymatic hydrolysis of bacter ...
Acidovorax sp., Acidovorax sp. TP4, Ralstonia pickettii, Ralstonia pickettii T1
Biomacromolecules
3
828-834
2002
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246537
Jendrossek
Microbial degradation of polye ...
Pseudomonas fluorescens, Pseudomonas fluorescens GK13
Adv. Biochem. Eng. Biotechnol.
71
293-325
2001
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664975
Gao
Identification of the intracel ...
Paracoccus denitrificans
FEMS Microbiol. Lett.
196
159-164
2001
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246542
Kim
Purification and characterizat ...
Pseudomonas sp., Pseudomonas sp. RY-1
J. Biosci. Bioeng.
89
196-198
2000
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246538
Garcia
Novel biodegradable aromatic p ...
Pseudomonas putida
J. Biol. Chem.
274
29228-29241
1999
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246541
Quinteros
Extracellular degradation of m ...
Comamonas sp., Comamonas sp. P37C
Int. J. Biol. Macromol.
25
135-143
1999
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246540
Jäger
Substrate specificities of bac ...
Pseudomonas fluorescens, Pseudomonas fluorescens GK13
Appl. Environ. Microbiol.
61
3113-3118
1995
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246544
Schirmer
Substrate specificities of pol ...
Pseudomonas fluorescens
Can. J. Microbiol.
41 Suppl. 1
170-179
1995
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246543
Schirmer
Molecular characterization of ...
Pseudomonas fluorescens
J. Bacteriol.
176
7065-7073
1994
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246539
Schirmer
Degradation of poly(3-hydroxyo ...
Pseudomonas fluorescens, Pseudomonas fluorescens GK13
Appl. Environ. Microbiol.
59
1220-1227
1993
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