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Literature summary for 3.1.1.11 extracted from

  • Tayi, L.; Maku, R.V.; Patel, H.K.; Sonti, R.V.
    Identification of pectin degrading enzymes secreted by Xanthomonas oryzae pv. oryzae and determination of their role in virulence on rice (2016), PLoS ONE, 11, e0166396 .
    View publication on PubMedView publication on EuropePMC
Search for more literature for 3.1.1.11

Cloned(Commentary)

Cloned (Comment) Organism
gene pmt, quantitative realtime PCR expression analysis Xanthomonas oryzae pv. oryzae

Protein Variants

Protein Variants Comment Organism
additional information construction of a enzyme-deficient pmt- mutant strain by gene disruption. A complementing strain (pmt-/pHM1+ pmt) expressing the Pmt protein from the overexpression vector pHM1 restored the pectin deesterifying activity and thus formed a red zone like wild-type strain Xanthomonas oryzae pv. oryzae

Localization

Localization Comment Organism GeneOntology No. Textmining
extracellular the enzyme is secreted Xanthomonas oryzae pv. oryzae
-
-

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
pectin + n H2O Xanthomonas oryzae pv. oryzae
-
 n methanol + pectate
-
 ?
pectin + n H2O Xanthomonas oryzae pv. oryzae KACC10331
-
 n methanol + pectate
-
 ?
pectin + n H2O Xanthomonas oryzae pv. oryzae KXO85
-
 n methanol + pectate
-
 ?
pectin + n H2O Xanthomonas oryzae pv. oryzae BXO43
-
 n methanol + pectate
-
 ?

Organism

Organism UniProt Comment Textmining
Xanthomonas oryzae pv. oryzae Q5GZC1
-
-
Xanthomonas oryzae pv. oryzae BXO43 Q5GZC1
-
-
Xanthomonas oryzae pv. oryzae KACC10331 Q5GZC1
-
-
Xanthomonas oryzae pv. oryzae KXO85 Q5GZC1
-
-

Source Tissue

Source Tissue Comment Organism Textmining
additional information no difference in the expression of pmt gene by laboratory wild-type Xoo strain (BXO43) grown in either nutrient rich PS medium or in plant mimic XOM2 medium Xanthomonas oryzae pv. oryzae
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
pectin + n H2O
-
 Xanthomonas oryzae pv. oryzae n methanol + pectate
-
 ?
pectin + n H2O
-
 Xanthomonas oryzae pv. oryzae KACC10331 n methanol + pectate
-
 ?
pectin + n H2O
-
 Xanthomonas oryzae pv. oryzae KXO85 n methanol + pectate
-
 ?
pectin + n H2O
-
 Xanthomonas oryzae pv. oryzae BXO43 n methanol + pectate
-
 ?

Synonyms

Synonyms Comment Organism
pectin methyl esterase
-
 Xanthomonas oryzae pv. oryzae
pectin methylesterase
-
 Xanthomonas oryzae pv. oryzae
PemB UniProt Xanthomonas oryzae pv. oryzae
PMT
-
 Xanthomonas oryzae pv. oryzae
Xoo
-
 Xanthomonas oryzae pv. oryzae
XOO2696 gene name, UniProt Xanthomonas oryzae pv. oryzae

General Information

General Information Comment Organism
malfunction mutations in the pglA, pmt, pel and pelL genes have minimal effects on virulence Xanthomonas oryzae pv. oryzae
physiological function presence of four pectin homogalacturonan (HG) degrading genes in the genome of Xoo. The four HG degrading genes include one polygalacturonase (pglA), one pectin methyl esterase (pmt) and two pectate lyases (pel and pelL). PglA is the major pectin degrading enzyme produced by Xoo. The pectin methyl esterase, Pmt, is the pectin deesterifying enzyme secreted by Xoo as evident from the enzymatic activity assay performed using pectin as the substrate. Compared to cellulases and xylanases, the HG degrading enzymes may not have a major role in the pathogenicity of strain BXO43 Xanthomonas oryzae pv. oryzae