Application | Comment | Organism |
---|---|---|
industry | CtPME can be potentially used in food and textile industry applications | Acetivibrio thermocellus |
Cloned (Comment) | Organism |
---|---|
gene Cthe_2949, DNA and amino acid sequence determination and analysis and tree, recombinant expression of His6-tagged enzyme in Escherichia coli strain BL21(DE3) | Acetivibrio thermocellus |
Inhibitors | Comment | Organism | Structure |
---|---|---|---|
Al3+ | - |
Acetivibrio thermocellus | |
Cu2+ | - |
Acetivibrio thermocellus | |
EDTA | - |
Acetivibrio thermocellus | |
EGTA | - |
Acetivibrio thermocellus | |
Fe2+ | - |
Acetivibrio thermocellus | |
Hg2+ | almost complete inhibition at 5 mM | Acetivibrio thermocellus | |
additional information | no inhibition by Tween 20 and Triton X100 at 5 mM | Acetivibrio thermocellus | |
SDS | - |
Acetivibrio thermocellus | |
Tween 80 | - |
Acetivibrio thermocellus | |
Urea | - |
Acetivibrio thermocellus | |
Zn2+ | strong inhibition at 5 mM | Acetivibrio thermocellus |
KM Value [mM] | KM Value Maximum [mM] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
3.1 | - |
Pectin | Citrus pectin (85% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
3.8 | - |
Pectin | apple pectin, recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
4.2 | - |
Pectin | Citrus pectin (75% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
4.7 | - |
Pectin | Citrus pectin (50% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
8.9 | - |
Pectin | Citrus pectin (25% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus |
Metals/Ions | Comment | Organism | Structure |
---|---|---|---|
Ca2+ | 40% activation at 5 mM | Acetivibrio thermocellus | |
Co2+ | activates at 5 mM | Acetivibrio thermocellus | |
Cs+ | activates slightly at 5 mM | Acetivibrio thermocellus | |
Mg2+ | 40% activation at 5 mM | Acetivibrio thermocellus | |
Mn2+ | activates at 5 mM | Acetivibrio thermocellus | |
additional information | no or poor effect by 5 mM of Ba2+, Li+, K+, and Cs+ | Acetivibrio thermocellus | |
NaCl | activates slightly at 5 mM | Acetivibrio thermocellus |
Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
---|---|---|---|---|---|---|
pectin + n H2O | Acetivibrio thermocellus | - |
n methanol + pectate | - |
? | |
pectin + n H2O | Acetivibrio thermocellus ATCC 27405 | - |
n methanol + pectate | - |
? |
Organism | UniProt | Comment | Textmining |
---|---|---|---|
Acetivibrio thermocellus | A3DJL8 | - |
- |
Acetivibrio thermocellus ATCC 27405 | A3DJL8 | - |
- |
Purification (Comment) | Organism |
---|---|
recombinant His6-tagged enzyme from Escherichia coli strain BL21(DE3) by metal affinity chromatography and dialysis | Acetivibrio thermocellus |
Specific Activity Minimum [µmol/min/mg] | Specific Activity Maximum [µmol/min/mg] | Comment | Organism |
---|---|---|---|
8.5 | - |
purified recombinant enzyme, pH 8.5, 50°C, substrate Citrus pectin DM 25% | Acetivibrio thermocellus |
12.3 | - |
purified recombinant enzyme, pH 8.5, 50°C, substrate Citrus pectin DM 50% | Acetivibrio thermocellus |
14.1 | - |
purified recombinant enzyme, pH 8.5, 50°C, substrate apple pectin | Acetivibrio thermocellus |
14.8 | - |
purified recombinant enzyme, pH 8.5, 50°C, substrate Citrus pectin DM 75% | Acetivibrio thermocellus |
18.1 | - |
purified recombinant enzyme, pH 8.5, 50°C, substrate Citrus pectin DM 85% | Acetivibrio thermocellus |
Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
---|---|---|---|---|---|---|
additional information | substrate specificity of CtPME is analysed against various pectic substrates (1%, w/v), viz. Citrus pectin of varying degrees of methyl esterification (85, 75-50 and 25%), apple pectin and poly galacturonic acid (PGA) from Citrus fruit, pectic galactan from potato and lupin, rhamnogalacturonan from soybean (RGS) and potato (RGP), overview | Acetivibrio thermocellus | ? | - |
? | |
additional information | substrate specificity of CtPME is analysed against various pectic substrates (1%, w/v), viz. Citrus pectin of varying degrees of methyl esterification (85, 75-50 and 25%), apple pectin and poly galacturonic acid (PGA) from Citrus fruit, pectic galactan from potato and lupin, rhamnogalacturonan from soybean (RGS) and potato (RGP), overview | Acetivibrio thermocellus ATCC 27405 | ? | - |
? | |
pectin + n H2O | - |
Acetivibrio thermocellus | n methanol + pectate | - |
? | |
pectin + n H2O | best substrate is Citrus pectin with 85% methyl esterification | Acetivibrio thermocellus | n methanol + pectate | - |
? | |
pectin + n H2O | - |
Acetivibrio thermocellus ATCC 27405 | n methanol + pectate | - |
? | |
pectin + n H2O | best substrate is Citrus pectin with 85% methyl esterification | Acetivibrio thermocellus ATCC 27405 | n methanol + pectate | - |
? |
Subunits | Comment | Organism |
---|---|---|
? | x * 35558, recombinant His6-tagged enzyme, MALDI-TOF mass spectrometry | Acetivibrio thermocellus |
More | peptide mass fingerprint is performed by MALDI-TOF MS in reflectron mode with small molecule molecular weight range (500-5000 Da) | Acetivibrio thermocellus |
Synonyms | Comment | Organism |
---|---|---|
Cthe_2949 | - |
Acetivibrio thermocellus |
CtPME | - |
Acetivibrio thermocellus |
pectin methylesterase | - |
Acetivibrio thermocellus |
Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
---|---|---|---|
50 | - |
recombinant enzyme | Acetivibrio thermocellus |
Temperature Stability Minimum [°C] | Temperature Stability Maximum [°C] | Comment | Organism |
---|---|---|---|
40 | 70 | recombinant enzyme, CtPME retains 80% activity | Acetivibrio thermocellus |
50 | 60 | recombinant enzyme, CtPME retains 90% activity in the temperature range | Acetivibrio thermocellus |
80 | 85 | the protein melting curve of CtPME gives a peak at 80°C. The peak is shifted to 85°C in the presence of 5 mM Ca2+ ions, and the addition of 5 mM EDTA shifts back the melting peak to 80°C | Acetivibrio thermocellus |
Turnover Number Minimum [1/s] | Turnover Number Maximum [1/s] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
1.72 | - |
Pectin | Citrus pectin (25% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
2.62 | - |
Pectin | Citrus pectin (50% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
3.06 | - |
Pectin | Citrus pectin (75% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
3.68 | - |
Pectin | apple pectin, recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
3.77 | - |
Pectin | Citrus pectin (85% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus |
pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
---|---|---|---|
8.5 | - |
recombinant enzyme | Acetivibrio thermocellus |
pH Stability | pH Stability Maximum | Comment | Organism |
---|---|---|---|
8 | 9 | recombinant enzyme, CtPME retains 85% activity | Acetivibrio thermocellus |
General Information | Comment | Organism |
---|---|---|
evolution | thermostable pectin methylesterase (CtPME) from Clostridium thermocellum belongs to family 8 carbohydrate esterase (CE8) | Acetivibrio thermocellus |
kcat/KM Value [1/mMs-1] | kcat/KM Value Maximum [1/mMs-1] | Substrate | Comment | Organism | Structure |
---|---|---|---|---|---|
0.2 | - |
Pectin | Citrus pectin (25% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
0.55 | - |
Pectin | Citrus pectin (50% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
0.72 | - |
Pectin | Citrus pectin (75% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
0.97 | - |
Pectin | apple pectin, recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus | |
1.21 | - |
Pectin | Citrus pectin (85% esterified), recombinant enzyme, pH 8.5, 50°C | Acetivibrio thermocellus |