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Literature summary for 2.7.1.29 extracted from
- Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics (2017), PeerJ, 5, e2844 .
Cloned(Commentary)
| Cloned (Comment) | Organism |
|---|---|
| genes dhaL and dhaK, DNA and amino acid sequence determination and analysis phylogenetic analysis | Haloquadratum walsbyi |
| genes dhaL and dhaK, DNA and amino acid sequence determination and analysis phylogenetic analysis | Halorubrum lacusprofundi |
Protein Variants
| Protein Variants | Comment | Organism |
|---|---|---|
| additional information | by using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts | Haloquadratum walsbyi |
| additional information | by using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts | Halorubrum lacusprofundi |
Natural Substrates/ Products (Substrates)
| Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| ATP + glycerone | Haloquadratum walsbyi | - |
ADP + glycerone phosphate | - |
? |  |
| ATP + glycerone | Halorubrum lacusprofundi | - |
ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | Haloquadratum walsbyi DSM 16854 | - |
ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | Halorubrum lacusprofundi ATCC 49239 | - |
ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | Haloquadratum walsbyi C23 | - |
ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | Haloquadratum walsbyi JCM 12705 | - |
ADP + glycerone phosphate | - |
? | |
Organism
| Organism | UniProt | Comment | Textmining |
|---|---|---|---|
| Haloquadratum walsbyi | G0LLJ3 AND G0LLJ4 | dihydroxyacetone kinase subunits DhaK and DhaL | - |
| Haloquadratum walsbyi C23 | G0LLJ3 AND G0LLJ4 | dihydroxyacetone kinase subunits DhaK and DhaL | - |
| Haloquadratum walsbyi DSM 16854 | G0LLJ3 AND G0LLJ4 | dihydroxyacetone kinase subunits DhaK and DhaL | - |
| Haloquadratum walsbyi JCM 12705 | G0LLJ3 AND G0LLJ4 | dihydroxyacetone kinase subunits DhaK and DhaL | - |
| Halorubrum lacusprofundi | B9LNV8 AND B9LNV9 | dihydroxyacetone kinase subunits DhaK and DhaL | - |
| Halorubrum lacusprofundi ATCC 49239 | B9LNV8 AND B9LNV9 | dihydroxyacetone kinase subunits DhaK and DhaL | - |
Substrates and Products (Substrate)
| Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|
| ATP + glycerone | - |
Haloquadratum walsbyi | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | - |
Halorubrum lacusprofundi | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | dihydroxyacetone | Haloquadratum walsbyi | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | dihydroxyacetone | Halorubrum lacusprofundi | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | - |
Haloquadratum walsbyi DSM 16854 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | dihydroxyacetone | Haloquadratum walsbyi DSM 16854 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | - |
Halorubrum lacusprofundi ATCC 49239 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | dihydroxyacetone | Halorubrum lacusprofundi ATCC 49239 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | - |
Haloquadratum walsbyi C23 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | dihydroxyacetone | Haloquadratum walsbyi C23 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | - |
Haloquadratum walsbyi JCM 12705 | ADP + glycerone phosphate | - |
? | |
| ATP + glycerone | dihydroxyacetone | Haloquadratum walsbyi JCM 12705 | ADP + glycerone phosphate | - |
? | |
Synonyms
| Synonyms | Comment | Organism |
|---|---|---|
| DhaK | - |
Haloquadratum walsbyi |
| DhaK | - |
Halorubrum lacusprofundi |
| DhaL | - |
Haloquadratum walsbyi |
| DhaL | - |
Halorubrum lacusprofundi |
| dihydroxyacetone kinase | - |
Haloquadratum walsbyi |
| dihydroxyacetone kinase | - |
Halorubrum lacusprofundi |
General Information
| General Information | Comment | Organism |
|---|---|---|
| evolution | analysis of the glycerol metabolism genes in metagenomes suggests that Halorubrum and Haloquadratum possess mostly dihydroxyacetone kinase genes while Salinibacter possesses mostly glycerol-3-phosphate dehydrogenase genes. Family abundance of genes dhaL and dhaK, phylogenetic analysis. Across gene family, taxonomic affiliations of the dihydroxyacetone kinase families are closest to each other, as well as those of the alcohol dehydrogenase (Fe-ADH) and glycerol kinase (FGGY) gene families. Haloquadratum associates with dihydroxyacetone kinase gene families in the SS19, SS33, and SS37 metagenomes. By using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts | Haloquadratum walsbyi |
| evolution | analysis of the glycerol metabolism genes in metagenomes suggests that Halorubrum and Haloquadratum possess mostly dihydroxyacetone kinase genes while Salinibacter possesses mostly glycerol-3-phosphate dehydrogenase genes. Family abundance of genes dhaL and dhaK, phylogenetic analysis. Across gene family, taxonomic affiliations of the dihydroxyacetone kinase families are closest to each other, as well as those of the alcohol dehydrogenase (Fe-ADH) and glycerol kinase (FGGY) gene families. Halorubrum associates with dihydroxyacetone kinase gene families in the IC21 and Cahuil metagenomes. By using the power of CRISPR spacers to link viruses to their prokaryotic hosts, the virus-host interactions in geographically diverse salterns are explored. Metagenomic CRISPRs detected with two independent methods map haloviruses to saltern hosts | Halorubrum lacusprofundi |
| additional information | biological plausibility of virus-host associations, overview. Map of virus-host interactions generated by aligning spacers detected with reference-guided methods in metagenomes SS13, SS19, SS33, SS37, IC21, and Cahuil/C34 | Haloquadratum walsbyi |
| additional information | biological plausibility of virus-host associations, overview. Map of virus-host interactions generated by aligning spacers detected with reference-guided methods in metagenomes SS13, SS19, SS33, SS37, IC21, and Cahuil/C34 | Halorubrum lacusprofundi |
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