BRENDA - Enzyme Database show
show all sequences of 2.5.1.10

Cloning and characterization of a farnesyl pyrophosphate synthase from Matricaria recutita L. and its upregulation by methyl jasmonate

Su, S.S.; Zhang, H.M.; Liu, X.Y.; Pan, G.F.; Ling, S.P.; Zhang, X.S.; Yang, X.M.; Tai, Y.L.; Yuan, Y.; Genet. Mol. Res. 14, 349-361 (2015)

Data extracted from this reference:

Cloned(Commentary)
Commentary
Organism
expressed in Escherichia coli BL21(DE3) cells
Matricaria chamomilla var. recutita
Molecular Weight [Da]
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
39400
-
x * 39400, calculated from amino acid sequence
Matricaria chamomilla var. recutita
43000
-
x * 43000, SDS-PAGE
Matricaria chamomilla var. recutita
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
geranyl diphosphate + isopentenyl diphosphate
Matricaria chamomilla var. recutita
-
diphosphate + (2E,6E)-farnesyl diphosphate
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Matricaria chamomilla var. recutita
A7L691
-
-
Purification (Commentary)
Commentary
Organism
Ni-NTA resin column chromatography
Matricaria chamomilla var. recutita
Source Tissue
Source Tissue
Commentary
Organism
Textmining
flower
highest expression
Matricaria chamomilla var. recutita
-
leaf
-
Matricaria chamomilla var. recutita
-
root
-
Matricaria chamomilla var. recutita
-
stem
high expression
Matricaria chamomilla var. recutita
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
geranyl diphosphate + isopentenyl diphosphate
-
738331
Matricaria chamomilla var. recutita
diphosphate + (2E,6E)-farnesyl diphosphate
-
-
-
?
Subunits
Subunits
Commentary
Organism
?
x * 39400, calculated from amino acid sequence; x * 43000, SDS-PAGE
Matricaria chamomilla var. recutita
pI Value
Organism
Commentary
pI Value Maximum
pI Value
Matricaria chamomilla var. recutita
calculated from amino acid sequence
-
5.6
Cloned(Commentary) (protein specific)
Commentary
Organism
expressed in Escherichia coli BL21(DE3) cells
Matricaria chamomilla var. recutita
Molecular Weight [Da] (protein specific)
Molecular Weight [Da]
Molecular Weight Maximum [Da]
Commentary
Organism
39400
-
x * 39400, calculated from amino acid sequence
Matricaria chamomilla var. recutita
43000
-
x * 43000, SDS-PAGE
Matricaria chamomilla var. recutita
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
geranyl diphosphate + isopentenyl diphosphate
Matricaria chamomilla var. recutita
-
diphosphate + (2E,6E)-farnesyl diphosphate
-
-
?
Purification (Commentary) (protein specific)
Commentary
Organism
Ni-NTA resin column chromatography
Matricaria chamomilla var. recutita
Source Tissue (protein specific)
Source Tissue
Commentary
Organism
Textmining
flower
highest expression
Matricaria chamomilla var. recutita
-
leaf
-
Matricaria chamomilla var. recutita
-
root
-
Matricaria chamomilla var. recutita
-
stem
high expression
Matricaria chamomilla var. recutita
-
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
geranyl diphosphate + isopentenyl diphosphate
-
738331
Matricaria chamomilla var. recutita
diphosphate + (2E,6E)-farnesyl diphosphate
-
-
-
?
Subunits (protein specific)
Subunits
Commentary
Organism
?
x * 39400, calculated from amino acid sequence; x * 43000, SDS-PAGE
Matricaria chamomilla var. recutita
pI Value (protein specific)
Organism
Commentary
pI Value Maximum
pI Value
Matricaria chamomilla var. recutita
calculated from amino acid sequence
-
5.6
Expression
Organism
Commentary
Expression
Matricaria chamomilla var. recutita
the enzyme expression is upregulation about 10fold 12 h after treatment with 0.1 mM methyl jasmonate
up
Expression (protein specific)
Organism
Commentary
Expression
Matricaria chamomilla var. recutita
the enzyme expression is upregulation about 10fold 12 h after treatment with 0.1 mM methyl jasmonate
up
Other publictions for EC 2.5.1.10
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
737926
Sharifirad
Characterization of a farnesyl ...
Penicillium brevicompactum, Penicillium brevicompactum MUCL 19011
Biotechnol. Lett.
38
71-79
2016
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1
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8
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1
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738477
Deng
Enhanced (S)-linalool producti ...
Actinidia arguta
J. Appl. Microbiol.
121
187-195
2016
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1
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1
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737359
Schmidberger
Structural characterization of ...
Pseudomonas aeruginosa
Acta Crystallogr. Sect. D
71
721-731
2015
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1
1
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2
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1
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737821
Gritzalis
Probing the molecular and stru ...
Homo sapiens
Bioorg. Med. Chem. Lett.
25
1117-1123
2015
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17
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1
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738069
Marzinzik
Discovery of novel allosteric ...
Homo sapiens
ChemMedChem
10
1884-1891
2015
-
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26
-
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1
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1
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23
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23
26
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738331
Su
Cloning and characterization o ...
Matricaria chamomilla var. recutita
Genet. Mol. Res.
14
349-361
2015
-
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1
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2
1
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6
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1
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4
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1
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1
1
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1
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-
739384
Richter
A small, differentially regula ...
Zea mays
Planta
241
1351-1361
2015
-
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2
1
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4
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1
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1
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1
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1
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739414
Zhao
Molecular cloning and characte ...
Tripterygium wilfordii
PLoS ONE
10
e0125415
2015
-
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1
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1
2
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3
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1
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3
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6
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2
2
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2
1
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2
-
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739656
Ferriols
Cloning and characterization o ...
Rhizosolenia setigera, Rhizosolenia setigera CCMP1694
Sci. Rep.
5
10246
2015
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1
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1
4
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1
4
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6
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1
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4
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4
1
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4
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1
1
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-
737349
Aripirala
Structural and thermodynamic b ...
Leishmania major
Acta Crystallogr. Sect. D
70
802-810
2014
-
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1
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4
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1
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1
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5
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1
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737749
Das
Upregulation of endogenous far ...
Homo sapiens
Biochim. Biophys. Acta
1841
569-573
2014
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1
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739513
Alcaino
Functional characterization of ...
Xanthophyllomyces dendrorhous, Xanthophyllomyces dendrorhous ATCC 24230
PLoS ONE
9
e96626
2014
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739542
Liu
Taxodione and arenarone inhibi ...
Homo sapiens, Trypanosoma brucei
Proc. Natl. Acad. Sci. USA
111
E2530-E2539
2014
-
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1
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17
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4
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4
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16
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1
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16
17
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723664
Frick
Metal ions control product spe ...
Phaedon cochleariae
Proc. Natl. Acad. Sci. USA
110
4194-4199
2013
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4
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737833
Leung
Discovery of thienopyrimidine- ...
Homo sapiens
Bioorg. Med. Chem.
21
2229-2240
2013
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7
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721671
Li
The N-terminus and the chain-l ...
Toxoplasma gondii, Toxoplasma gondii RH
Biochemistry
51
7533-7540
2012
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722094
Demoro
Bisphosphonate metal complexes ...
Trypanosoma cruzi
Dalton Trans.
41
6468-6476
2012
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15
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15
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15
15
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722923
Aripirala
Design, synthesis, calorimetry ...
Trypanosoma cruzi
J. Med. Chem.
55
6445-6454
2012
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11
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11
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723003
Nagaki
-
Substrate specificities of E- ...
Geobacillus stearothermophilus, Geobacillus stearothermophilus ATCC 10149
J. Mol. Catal. B
80
1-6
2012
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723709
Sun
In silico and in vitro analyse ...
Rhopalosiphum padi
Protein J.
31
417-424
2012
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1
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3
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2
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1
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2
1
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2
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2
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6
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2
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2
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2
2
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2
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721830
Rosso
Synthesis and biological evalu ...
Toxoplasma gondii, Trypanosoma cruzi
Bioorg. Med. Chem.
19
2211-2217
2011
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1
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24
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4
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2
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16
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1
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16
24
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2
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2
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723047
Thabet
The subcellular localization o ...
Catharanthus roseus
J. Plant Physiol.
168
2110-2116
2011
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Farnesyl diphosphate synthase: ...
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Farnesyl diphosphate synthase; ...
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2
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2
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1
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1
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5
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638696
Cornforth
Studies on the biosynthesis of ...
Sus scrofa
J. Biol. Chem.
241
3970-3987
1966
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