BRENDA - Enzyme Database show
show all sequences of 1.4.4.2

Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia

Nakai, T.; Nakagawa, N.; Maoka, N.; Masui, R.; Kuramitsu, S.; Kamiya, N.; EMBO J. 24, 1523-1536 (2005)

Data extracted from this reference:

Crystallization (Commentary)
Crystallization
Organism
vapour diffusion method with 30% w/v polyethylene glycol 3350 and 100 mM KSCN as the precipitant. Crystal structure of three forms of P-protein: the apoenzyme at 2.4 A resolution, the holoenzyme at 2.1 A resolution and the holoenzyme in complex with a substrate analog inhibitor (aminooxy)acetate
Thermus thermophilus
Inhibitors
Inhibitors
Commentary
Organism
Structure
Aminooxyacetate
-
Thermus thermophilus
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Thermus thermophilus
-
-
-
Thermus thermophilus HB8 / ATCC 27634 / DSM 579
-
-
-
Cofactor
Cofactor
Commentary
Organism
Structure
pyridoxal 5'-phosphate
binding to the apoenzyme induces large open-closed conformational changes, with residues moving up to 13.5 A
Thermus thermophilus
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
pyridoxal 5'-phosphate
binding to the apoenzyme induces large open-closed conformational changes, with residues moving up to 13.5 A
Thermus thermophilus
Crystallization (Commentary) (protein specific)
Crystallization
Organism
vapour diffusion method with 30% w/v polyethylene glycol 3350 and 100 mM KSCN as the precipitant. Crystal structure of three forms of P-protein: the apoenzyme at 2.4 A resolution, the holoenzyme at 2.1 A resolution and the holoenzyme in complex with a substrate analog inhibitor (aminooxy)acetate
Thermus thermophilus
Inhibitors (protein specific)
Inhibitors
Commentary
Organism
Structure
Aminooxyacetate
-
Thermus thermophilus
Other publictions for EC 1.4.4.2
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
741906
Go
Glycine decarboxylase is an u ...
Homo sapiens
Biochemistry
53
947-956
2014
3
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1
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1
1
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5
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1
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1
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3
2
1
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7
1
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1
1
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5
5
743023
Azize
Mutation analysis of glycine ...
Homo sapiens
J. Hum. Genet.
59
593-597
2014
-
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1
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1
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743266
Varadarajan
Plasmodium berghei glycine cl ...
no activity in Plasmodium berghei
Mol. Biochem. Parasitol.
197
50-55
2014
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724693
Dominy
Glycine decarboxylase cleaves ...
Mus musculus
Cancer Cell
21
143-145
2012
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1
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1
1
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-
725016
Timm
Glycine decarboxylase controls ...
Arabidopsis thaliana
FEBS Lett.
586
3692-3697
2012
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1
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1
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3
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1
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1
1
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724197
Zay
Glycine cleavage enzyme comple ...
Homo sapiens
Biochem. Cell Biol.
89
299-307
2011
-
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1
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1
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5
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1
1
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725115
Zhang
-
Transcriptionally and phylogen ...
Brassica napus
Hortic. Environ. Biotechnol.
52
427-434
2011
-
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1
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710748
Hasse
Crystallization and preliminar ...
Synechocystis sp.
Acta Crystallogr. Sect. F
66
187-191
2010
-
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1
1
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-
-
-
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1
1
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4
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1
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2
1
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1
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2
1
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2
2
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713311
Palmieri
Regulation of plant glycine de ...
Arabidopsis thaliana
Plant Physiol.
152
1514-1528
2010
-
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5
-
1
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3
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1
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1
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1
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1
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3
3
-
-
-
719865
Okamura-Ikeda
Crystal structure of aminometh ...
Escherichia coli
J. Biol. Chem.
285
18684-18692
2010
-
-
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-
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1
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4
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1
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1
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-
697916
Hasse
Alternative splicing produces ...
Flaveria trinervia
FEBS J.
276
6985-6991
2009
-
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1
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1
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6
-
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1
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3
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1
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1
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3
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-
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698096
Kawaguchi
Genomic organization of region ...
Gallus gallus
Gene
432
7-18
2009
-
-
-
-
-
-
-
-
-
-
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1
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2
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1
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1
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-
688637
Parys
Mitochondria from leaf mesophy ...
Zea mays
J. Plant Physiol.
165
1061-1069
2008
-
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1
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6
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1
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1
1
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-
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-
689605
Engelmann
The gene for the P-subunit of ...
Flaveria trinervia
Plant Physiol.
146
1773-1785
2008
-
-
1
-
-
-
-
-
-
-
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5
-
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3
-
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1
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1
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3
-
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1
-
-
-
-
-
-
-
-
-
-
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-
-
-
-
706478
Kikuchi
Glycine cleavage system: react ...
Escherichia coli, Gallus gallus, Gottschalkia acidurici, Homo sapiens, Peptoclostridium acidaminophilum, Pisum sativum, Thermus thermophilus
Proc. Jpn. Acad. Ser. B Phys. Biol. Sci.
84
246-263
2008
-
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7
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11
-
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7
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7
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-
-
-
7
-
-
-
-
-
-
-
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7
7
-
-
-
686720
Hasse
Properties of recombinant glyc ...
Synechocystis sp.
FEBS Lett.
581
1297-1301
2007
-
-
1
-
-
-
-
11
-
-
-
-
-
2
-
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1
-
-
-
-
-
4
-
-
-
-
-
1
-
1
-
-
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1
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-
-
11
-
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1
-
-
-
-
4
-
-
-
-
-
1
-
1
-
-
-
-
-
-
-
688072
Rajinikanth
The glycine decarboxylase comp ...
Populus tremuloides
J. Exp. Bot.
58
1761-1770
2007
-
-
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1
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5
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6
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6
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689575
Engel
Deletion of glycine decarboxyl ...
Arabidopsis thaliana
Plant Physiol.
144
1328-1335
2007
-
-
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1
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1
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4
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1
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673411
Mukherjee
Proteins of the glycine decarb ...
Trichomonas vaginalis
Eukaryot. Cell
5
2062-2071
2006
-
-
1
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-
-
5
2
-
6
1
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4
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1
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3
2
1
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4
1
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1
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5
2
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6
1
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1
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3
2
1
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4
1
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676615
Eisenhut
The plant-like C2 glycolate cy ...
Synechocystis sp., Synechocystis sp. PCC 6803
Plant Physiol.
142
333-342
2006
-
1
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2
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1
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6
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1
1
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655343
Nakai
Structure of P-protein of the ...
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
EMBO J.
24
1523-1536
2005
-
-
-
1
-
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1
-
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-
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-
91
-
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1
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656820
Sellner
Detection of mutations in the ...
Homo sapiens
Mol. Genet. Metab.
84
167-171
2005
-
-
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1
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2
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1
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1
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1
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660325
Bykova
Interaction between photorespi ...
Solanum tuberosum
Planta
222
130-140
2005
-
-
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-
-
-
-
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1
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2
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1
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1
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676168
Dinopoulos
Glycine decarboxylase mutation ...
Homo sapiens
Neurology
64
1255-1257
2005
-
1
1
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2
-
-
-
-
-
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1
-
2
-
-
-
-
-
-
1
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1
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-
-
-
-
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-
1
1
-
-
2
-
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1
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-
-
1
-
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
676396
Hagemann
The glycine decarboxylase comp ...
Synechocystis sp., Synechocystis sp. PCC 6803
Plant Biol.
7
15-22
2005
-
1
1
-
4
-
1
-
-
-
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1
-
6
-
-
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-
-
-
-
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1
1
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1
1
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4
-
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1
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1
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1
1
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-
-
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-
-
-
-
-
-
-
-
654089
Nakai
Coexpression, purification, cr ...
Thermus thermophilus, Thermus thermophilus HB8 / ATCC 27634 / DSM 579
Acta Crystallogr. Sect. D
59
554-557
2003
-
-
-
1
-
-
-
-
-
-
-
-
-
93
-
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1
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