BRENDA - Enzyme Database show
show all sequences of 1.14.13.50

The recent evolution of pentachlorophenol (PCP)-4-monooxygenase (PcpB) and associated pathways for bacterial degradation of PCP

Crawford, R.L.; Jung, C.M.; Strap, J.L.; Biodegradation 18, 525-539 (2006)

Data extracted from this reference:

Application
Application
Commentary
Organism
additional information
the enzyme can be used for development of a model system for the study of recent evolution of catabolic pathways among bacteria that degrade xenobiotic molecules introduced into the environment during the recent past
Mycolicibacterium chlorophenolicum
additional information
the enzyme can be used for development of a model system for the study of recent evolution of catabolic pathways among bacteria that degrade xenobiotic molecules introduced into the environment during the recent past
Sphingobium chlorophenolicum
additional information
the enzyme can be used for development of a model system for the study of recent evolution of catabolic pathways among bacteria that degrade xenobiotic molecules introduced into the environment during the recent past
Sphingomonas sp.
Cloned(Commentary)
Commentary
Organism
gene pcpB, DNA and amino acid sequence analysis, phylogenetic analysis
Mycolicibacterium chlorophenolicum
gene pcpB, DNA and amino acid sequence analysis, phylogenetic analysis
Sphingobium chlorophenolicum
gene pcpB, DNA and amino acid sequence analysis, phylogenetic analysis
Sphingomonas sp.
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
additional information
Sphingomonas sp.
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
?
-
-
-
additional information
Sphingobium chlorophenolicum
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
?
-
-
-
additional information
Mycolicibacterium chlorophenolicum
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
?
-
-
-
pentachlorophenol + NADPH + O2
Sphingomonas sp.
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
?
pentachlorophenol + NADPH + O2
Sphingobium chlorophenolicum
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
?
pentachlorophenol + NADPH + O2
Mycolicibacterium chlorophenolicum
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Mycolicibacterium chlorophenolicum
-
i.e. Mycobacterium chlorophenolicus, gene pcpB
-
Sphingobium chlorophenolicum
-
i.e. Pseudomonas sp. RA2 and Pseudomonas sp. SR3, and Arthrobacter sp. strain ATCC 33790, gene pcpB; strain ATCC 39723, formerly Flavobacterium and Sphingomonas, gene pcpB
-
Sphingomonas sp.
-
ssp. UG25 and UG30, gene pcpB
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
2,3,4,6-tetrachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,3,5,6-tetrachlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,3,5,6-tetrachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,3,5-trichlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,3,6-trichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,3,6-trichlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,4,6-trichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,4-dichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,4-dinitrophenol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
2,6-dichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
3,4,5,6-tetrachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
3,4,5-trichlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
3,5-dibromo-4-hydroxybenzonitrile + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
4,6-dinitro-o-cresol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
4-nitrocatechol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
4-nitrophenol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
chloroguaiacol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
additional information
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
672455
Sphingomonas sp.
?
-
-
-
-
additional information
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
672455
Sphingobium chlorophenolicum
?
-
-
-
-
additional information
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
-
pentachlorophenol + NADPH + O2
-
672455
Sphingomonas sp.
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
672455
Sphingomonas sp.
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
672455
Sphingobium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
672455
Mycolicibacterium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
tribromophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
triiodophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
Tween 20 + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
Cofactor
Cofactor
Commentary
Organism
Structure
NADPH
-
Mycolicibacterium chlorophenolicum
NADPH
-
Sphingobium chlorophenolicum
NADPH
-
Sphingomonas sp.
Application (protein specific)
Application
Commentary
Organism
additional information
the enzyme can be used for development of a model system for the study of recent evolution of catabolic pathways among bacteria that degrade xenobiotic molecules introduced into the environment during the recent past
Mycolicibacterium chlorophenolicum
additional information
the enzyme can be used for development of a model system for the study of recent evolution of catabolic pathways among bacteria that degrade xenobiotic molecules introduced into the environment during the recent past
Sphingobium chlorophenolicum
additional information
the enzyme can be used for development of a model system for the study of recent evolution of catabolic pathways among bacteria that degrade xenobiotic molecules introduced into the environment during the recent past
Sphingomonas sp.
Cloned(Commentary) (protein specific)
Commentary
Organism
gene pcpB, DNA and amino acid sequence analysis, phylogenetic analysis
Mycolicibacterium chlorophenolicum
gene pcpB, DNA and amino acid sequence analysis, phylogenetic analysis
Sphingobium chlorophenolicum
gene pcpB, DNA and amino acid sequence analysis, phylogenetic analysis
Sphingomonas sp.
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
NADPH
-
Mycolicibacterium chlorophenolicum
NADPH
-
Sphingobium chlorophenolicum
NADPH
-
Sphingomonas sp.
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
additional information
Sphingomonas sp.
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
?
-
-
-
additional information
Sphingobium chlorophenolicum
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
?
-
-
-
additional information
Mycolicibacterium chlorophenolicum
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
?
-
-
-
pentachlorophenol + NADPH + O2
Sphingomonas sp.
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
?
pentachlorophenol + NADPH + O2
Sphingobium chlorophenolicum
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
?
pentachlorophenol + NADPH + O2
Mycolicibacterium chlorophenolicum
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
?
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
2,3,4,6-tetrachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,3,5,6-tetrachlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,3,5,6-tetrachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,3,5-trichlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,3,6-trichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,3,6-trichlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
2,4,6-trichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,4-dichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
2,4-dinitrophenol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
2,6-dichlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
3,4,5,6-tetrachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
3,4,5-trichlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
3,5-dibromo-4-hydroxybenzonitrile + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
4,6-dinitro-o-cresol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
4-nitrocatechol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
4-nitrophenol + NADPH + O2
-
672455
Sphingomonas sp.
?
-
-
-
?
chloroguaiacol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
?
additional information
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
672455
Sphingomonas sp.
?
-
-
-
-
additional information
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
672455
Sphingobium chlorophenolicum
?
-
-
-
-
additional information
lateral gene transfer and the origin of the pentachlorophenol pathway, overview
672455
Mycolicibacterium chlorophenolicum
?
-
-
-
-
pentachlorophenol + NADPH + O2
-
672455
Sphingomonas sp.
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
-
672455
Mycolicibacterium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
672455
Sphingomonas sp.
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
672455
Sphingobium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
pentachlorophenol + NADPH + O2
initial enzyme in the PCP catabolic pathway of numerous sphingomonads, PCP-4-monooxygenase (PcpB), catalyzes the parahydroxylation of PCP to tetrachlorohydroquinone, pentachlorophenol degradation pathway, overview
672455
Mycolicibacterium chlorophenolicum
2,3,5,6-tetrachlorohydroquinone + NADP+ + chloride + H2O
-
-
-
?
tribromophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
triiodophenol + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
Tween 20 + NADPH + O2
-
672455
Sphingobium chlorophenolicum
?
-
-
-
?
Other publictions for EC 1.14.13.50
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
744518
Joshi
-
Enhanced remediation of penta ...
Sphingobium chlorophenolicum, Sphingobium chlorophenolicum L-1
Bioremediat. J.
19
160-170
2015
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744327
Rudolph
A radical intermediate in the ...
Sphingobium chlorophenolicum
Biochemistry
53
6539-6549
2014
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1
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1
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1
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1
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1
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1
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2
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1
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1
1
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724340
Hlouchova
Pentachlorophenol hydroxylase, ...
Sphingobium chlorophenolicum
Biochemistry
51
3848-3860
2012
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1
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5
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2
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6
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5
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1
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5
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6
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5
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5
5
700529
Su
The Catalytic Product of Penta ...
Sphingobium chlorophenolicum
Open Microbiol. J.
2
100-106
2008
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1
1
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1
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1
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1
1
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1
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1
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1
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1
1
-
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-
672455
Crawford
The recent evolution of pentac ...
Mycolicibacterium chlorophenolicum, Sphingobium chlorophenolicum, Sphingomonas sp.
Biodegradation
18
525-539
2006
-
3
3
-
-
-
-
-
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6
-
4
-
-
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29
-
-
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3
-
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3
3
3
-
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6
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29
-
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658210
Nakamura
Identification, characterizati ...
Sphingobium chlorophenolicum
Biochim. Biophys. Acta
1700
151-159
2004
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1
-
7
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5
-
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1
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1
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1
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1
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1
2
1
-
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5
1
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2
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1
2
-
7
-
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-
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5
-
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1
-
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1
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1
-
1
2
1
-
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5
1
-
-
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-
-
-
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Enzymatic dehalogenation of pe ...
Pseudomonas fluorescens
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A previously unrecognized step ...
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438821
Wang
Subcellular localization of pe ...
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Molecular cloning and characte ...
Pseudomonas sp., Pseudomonas sp. IST 103
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2002
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Wang
Production and characterizatio ...
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2001
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438817
Leung
The role of the Sphingomonas s ...
Flavobacterium sp., Sphingomonas sp.
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1999
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Lange
Verification of the role of PC ...
Flavobacterium sp.
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1996
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438818
Orser
Cloning, sequence analysis, an ...
Flavobacterium sp.
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1993
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438815
Xun
Diverse substrate range of a F ...
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1992
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438816
Topp
Biodegradation of the herbicid ...
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438814
Xun
Purification and properties of ...
Flavobacterium sp.
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Schenk
Mechanism of enzymatic dehalog ...
Arthrobacter sp.
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438812
Schenk
Enzymatic dehalogenation of pe ...
Arthrobacter sp.
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