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show all sequences of 1.14.13.217

Pathway redesign for deoxyviolacein biosynthesis in Citrobacter freundii and characterization of this pigment

Jiang, P.X.; Wang, H.S.; Xiao, S.; Fang, M.Y.; Zhang, R.P.; He, S.Y.; Lou, K.; Xing, X.H.; Appl. Microbiol. Biotechnol. 94, 1521-1532 (2012)

Data extracted from this reference:

Engineering
Amino acid exchange
Commentary
Organism
additional information
deletion of gene vioD from the vioabcde gene cluster and recombinant expression of the modified vioabce gene cluster in Citrobacter freundii strain ACCC 05411, biosynthetic pathway of L-tryptophan to violacein in the wild-type and and deoxyviolacein in the vioD deletion mutant, overview. The absence of gene vioD appears to have no effect on cell growth of Citrobacter freundii compard to the untransfected wild-type
Duganella sp.
Natural Substrates/ Products (Substrates)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
protodeoxyviolaceinate + NAD(P)H + H+ + O2
Duganella sp.
-
protoviolaceinate + NAD(P)+
-
-
?
protodeoxyviolaceinate + NAD(P)H + H+ + O2
Duganella sp. B2
-
protoviolaceinate + NAD(P)+
-
-
?
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Duganella sp.
-
gene vioD
-
Duganella sp. B2
-
gene vioD
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
protodeoxyviolaceinate + NAD(P)H + H+ + O2
-
735532
Duganella sp.
protoviolaceinate + NAD(P)+
-
-
-
?
protodeoxyviolaceinate + NAD(P)H + H+ + O2
-
735532
Duganella sp. B2
protoviolaceinate + NAD(P)+
-
-
-
?
Cofactor
Cofactor
Commentary
Organism
Structure
NADH
-
Duganella sp.
NADPH
-
Duganella sp.
Cofactor (protein specific)
Cofactor
Commentary
Organism
Structure
NADH
-
Duganella sp.
NADPH
-
Duganella sp.
Engineering (protein specific)
Amino acid exchange
Commentary
Organism
additional information
deletion of gene vioD from the vioabcde gene cluster and recombinant expression of the modified vioabce gene cluster in Citrobacter freundii strain ACCC 05411, biosynthetic pathway of L-tryptophan to violacein in the wild-type and and deoxyviolacein in the vioD deletion mutant, overview. The absence of gene vioD appears to have no effect on cell growth of Citrobacter freundii compard to the untransfected wild-type
Duganella sp.
Natural Substrates/ Products (Substrates) (protein specific)
Natural Substrates
Organism
Commentary (Nat. Sub.)
Natural Products
Commentary (Nat. Pro.)
Organism (Nat. Pro.)
Reversibility
protodeoxyviolaceinate + NAD(P)H + H+ + O2
Duganella sp.
-
protoviolaceinate + NAD(P)+
-
-
?
protodeoxyviolaceinate + NAD(P)H + H+ + O2
Duganella sp. B2
-
protoviolaceinate + NAD(P)+
-
-
?
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
protodeoxyviolaceinate + NAD(P)H + H+ + O2
-
735532
Duganella sp.
protoviolaceinate + NAD(P)+
-
-
-
?
protodeoxyviolaceinate + NAD(P)H + H+ + O2
-
735532
Duganella sp. B2
protoviolaceinate + NAD(P)+
-
-
-
?
General Information
General Information
Commentary
Organism
malfunction
biosynthetic pathway of L-tryptophan to violacein in the wild-type and and deoxyviolacein in the vioD deletion mutant, overview
Duganella sp.
metabolism
biosynthetic pathway of L-tryptophan to violacein in the wild-type and and deoxyviolacein in the vioD deletion mutant, NMR analysis of reactio products and intermediates, overview
Duganella sp.
General Information (protein specific)
General Information
Commentary
Organism
malfunction
biosynthetic pathway of L-tryptophan to violacein in the wild-type and and deoxyviolacein in the vioD deletion mutant, overview
Duganella sp.
metabolism
biosynthetic pathway of L-tryptophan to violacein in the wild-type and and deoxyviolacein in the vioD deletion mutant, NMR analysis of reactio products and intermediates, overview
Duganella sp.
Other publictions for EC 1.14.13.217
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
735402
Ran
Expression, crystallization an ...
Chromobacterium violaceum
Acta crystallogr. Sect. F
71
149-152
2015
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1
1
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2
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1
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2
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1
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1
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2
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1
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2
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1
1
-
-
-
736735
Rodrigues
Systems metabolic engineering ...
Janthinobacterium lividum, Janthinobacterium lividum DSM 1522
Metab. Eng.
20
29-41
2013
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1
-
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2
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2
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1
2
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2
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2
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735532
Jiang
Pathway redesign for deoxyviol ...
Duganella sp., Duganella sp. B2
Appl. Microbiol. Biotechnol.
94
1521-1532
2012
-
-
-
-
1
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2
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2
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2
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1
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2
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2
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2
2
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735934
Shinoda
Biosynthesis of violacein: A g ...
Chromobacterium violaceum, Chromobacterium violaceum JCM 1249
Chem. Commun. (Camb.)
2007
4140-4142
2007
-
-
-
-
-
-
-
-
-
-
-
2
-
3
-
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-
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4
-
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2
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2
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2
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4
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2
2
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735666
Balibar
In vitro biosynthesis of viola ...
Chromobacterium violaceum, Chromobacterium violaceum ATCC 12472
Biochemistry
45
15444-15457
2006
-
-
1
-
-
-
-
-
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1
2
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2
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1
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6
1
1
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1
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3
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1
3
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1
2
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1
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6
1
1
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1
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1
1
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-
-
735954
Sanchez
Reevaluation of the violacein ...
Chromobacterium violaceum, Chromobacterium violaceum JCM 1249
ChemBioChem
7
1231-1240
2006
1
-
1
-
1
-
-
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4
-
3
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4
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2
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1
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1
2
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1
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4
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4
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3
3
-
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-
736665
August
Sequence analysis and function ...
Chromobacterium violaceum
J. Mol. Microbiol. Biotechnol.
2
513-519
2000
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1
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1
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3
3
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