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Literature summary for 1.13.11.57 extracted from

  • Sugimoto, K.; Yamamoto, Y.; Antoni, S.; Senda, M.; Kasai, D.; Masai, E.; Fukuda, M.; Senda, T.
    Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6 (2009), Acta Crystallogr. Sect. F, F65, 1171-1174.
    View publication on PubMedView publication on EuropePMC

Cloned(Commentary)

Cloned (Comment) Organism
expressed in Escherichia coli BL21(DE3) cells Sphingobium sp.

Crystallization (Commentary)

Crystallization (Comment) Organism
hanging drop vapor diffusion method, using 25% (w/v) PEG 8000, 0.1 M sodium acetate trihydrate, 0.1 M HEPES-NaOH pH 7.8, at 4°C Sphingobium sp.

Molecular Weight [Da]

Molecular Weight [Da] Molecular Weight Maximum [Da] Comment Organism
93800
-
calculated from amino acid sequence Sphingobium sp.

Organism

Organism UniProt Comment Textmining
Sphingobium sp.
-
formerly Sphingomonas paucimobilis strain SYK-6
-

Purification (Commentary)

Purification (Comment) Organism
POROS PI column chromatography and POROS HQ column chromatography Sphingobium sp.

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
gallate + O2
-
Sphingobium sp. 4-oxalomesaconate
-
?

Subunits

Subunits Comment Organism
homodimer x-ray crystallography Sphingobium sp.

Synonyms

Synonyms Comment Organism
DesB
-
Sphingobium sp.