ATP-binding cassette (ABC) transport system solute-binding protein-guided identification of novel D-altritol and galactitol catabolic pathways in Agrobacterium tumefaciens C58

Wichelecki, D.; Vetting, M.; Chou, L.; Al-Obaidi, N.; Bouvier, J.; Almo, S.; Gerlt, J.; J. Biol. Chem. 290, 28963-28976 (2015)

Data extracted from this reference:

KM Value [mM]

KM Value Maximum [mM]

Substrate

Commentary

Organism

Structure

1.4

-

D-altritol

pH 9.0, 25°C

Agrobacterium fabrum

Metals/Ions

Commentary

Organism

Structure

Zn2+

enzyme is a zinc-binding dehydrogenase, member of Pfam Family PF00107

Agrobacterium fabrum

Natural Substrates

Organism

Commentary (Nat. Sub.)

Natural Products

Commentary (Nat. Pro.)

Organism (Nat. Pro.)

Reversibility

ID

D-altritol + NAD+

Agrobacterium fabrum

-

D-tagatose + NADH + H+

-

-

?

D-altritol + NAD+

Agrobacterium fabrum C58

-

D-tagatose + NADH + H+

-

-

?

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

Substrate Product ID

D-altritol + NAD+

-

740741

Agrobacterium fabrum

D-tagatose + NADH + H+

-

-

-

?

D-altritol + NAD+

-

740741

Agrobacterium fabrum C58

D-tagatose + NADH + H+

-

-

-

?

D-arabitol + NAD+

-

740741

Agrobacterium fabrum

? + NADH + H+

-

-

-

?

D-arabitol + NAD+

-

740741

Agrobacterium fabrum C58

? + NADH + H+

-

-

-

?

D-mannitol + NAD+

-

740741

Agrobacterium fabrum

? + NADH + H+

-

-

-

?

D-mannitol + NAD+

-

740741

Agrobacterium fabrum C58

? + NADH + H+

-

-

-

?

additional information

D-altritol is oxidized at a significantly greater rate than D-mannitol and D-arabitol

740741

Agrobacterium fabrum

?

-

-

-

-

additional information

D-altritol is oxidized at a significantly greater rate than D-mannitol and D-arabitol

740741

Agrobacterium fabrum C58

?

-

-

-

-

Turnover Number Minimum [1/s]

Turnover Number Maximum [1/s]

Substrate

Commentary

Organism

Structure

1.9

-

D-altritol

pH 9.0, 25°C

Agrobacterium fabrum

KM Value [mM]

KM Value Maximum [mM]

Substrate

Commentary

Organism

Structure

1.4

-

D-altritol

pH 9.0, 25°C

Agrobacterium fabrum

Metals/Ions

Commentary

Organism

Structure

Zn2+

enzyme is a zinc-binding dehydrogenase, member of Pfam Family PF00107

Agrobacterium fabrum

Natural Substrates

Organism

Commentary (Nat. Sub.)

Natural Products

Commentary (Nat. Pro.)

Organism (Nat. Pro.)

Reversibility

ID

D-altritol + NAD+

Agrobacterium fabrum

-

D-tagatose + NADH + H+

-

-

?

D-altritol + NAD+

Agrobacterium fabrum C58

-

D-tagatose + NADH + H+

-

-

?

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

ID

D-altritol + NAD+

-

740741

Agrobacterium fabrum

D-tagatose + NADH + H+

-

-

-

?

D-altritol + NAD+

-

740741

Agrobacterium fabrum C58

D-tagatose + NADH + H+

-

-

-

?

D-arabitol + NAD+

-

740741

Agrobacterium fabrum

? + NADH + H+

-

-

-

?

D-arabitol + NAD+

-

740741

Agrobacterium fabrum C58

? + NADH + H+

-

-

-

?

D-mannitol + NAD+

-

740741

Agrobacterium fabrum

? + NADH + H+

-

-

-

?

D-mannitol + NAD+

-

740741

Agrobacterium fabrum C58

? + NADH + H+

-

-

-

?

additional information

D-altritol is oxidized at a significantly greater rate than D-mannitol and D-arabitol

740741

Agrobacterium fabrum

?

-

-

-

-

additional information

D-altritol is oxidized at a significantly greater rate than D-mannitol and D-arabitol

740741

Agrobacterium fabrum C58

?

-

-

-

-

Turnover Number Minimum [1/s]

Turnover Number Maximum [1/s]

Substrate

Commentary

Organism

Structure

1.9

-

D-altritol

pH 9.0, 25°C

Agrobacterium fabrum

kcat/KM Value [1/mMs^-1]

kcat/KM Value Maximum [1/mMs^-1]

Substrate

Commentary

Organism

Structure

1.4

-

D-altritol

pH 9.0, 25°C

Agrobacterium fabrum

KCat/KM Value [1/mMs^-1]

KCat/KM Value Maximum [1/mMs^-1]

Substrate

Commentary

Organism

Structure

1.4

-

D-altritol

pH 9.0, 25°C

Agrobacterium fabrum

No.

1st author

Pub Med

title

organims

journal

volume

pages

year

Activating Compound

Application

Cloned(Commentary)

Crystallization (Commentary)

Engineering

General Stability

Inhibitors

KM Value [mM]

Localization

Metals/Ions

Molecular Weight [Da]

Natural Substrates/ Products (Substrates)

Organic Solvent Stability

Organism

Oxidation Stability

Posttranslational Modification

Purification (Commentary)

Reaction

Renatured (Commentary)

Source Tissue

Specific Activity [micromol/min/mg]

Storage Stability

Substrates and Products (Substrate)

Subunits

Synonyms

Temperature Optimum [°C]

Temperature Range [°C]

Temperature Stability [°C]

Turnover Number [1/s]

pH Optimum

pH Range

pH Stability

Cofactor

Ki Value [mM]

pI Value

IC50 Value

Activating Compound (protein specific)

Application (protein specific)

Cloned(Commentary) (protein specific)

Cofactor (protein specific)

Crystallization (Commentary) (protein specific)

Engineering (protein specific)

General Stability (protein specific)

IC50 Value (protein specific)

Inhibitors (protein specific)

Ki Value [mM] (protein specific)

KM Value [mM] (protein specific)

Localization (protein specific)

Metals/Ions (protein specific)

Molecular Weight [Da] (protein specific)

Natural Substrates/ Products (Substrates) (protein specific)

Organic Solvent Stability (protein specific)

Oxidation Stability (protein specific)

Posttranslational Modification (protein specific)

Purification (Commentary) (protein specific)

Renatured (Commentary) (protein specific)

Source Tissue (protein specific)

Specific Activity [micromol/min/mg] (protein specific)

Storage Stability (protein specific)

Substrates and Products (Substrate) (protein specific)

Subunits (protein specific)

Temperature Optimum [°C] (protein specific)

Temperature Range [°C] (protein specific)

Temperature Stability [°C] (protein specific)

Turnover Number [1/s] (protein specific)

pH Optimum (protein specific)

pH Range (protein specific)

pH Stability (protein specific)

pI Value (protein specific)

Expression

General Information

General Information (protein specific)

Expression (protein specific)

KCat/KM [mM/s]

KCat/KM [mM/s] (protein specific)

740741

Wichelecki

ATP-binding cassette (ABC) tra ...

Agrobacterium fabrum, Agrobacterium fabrum C58

J. Biol. Chem.

290

28963-28976

2015

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