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Ligand dimethyl sulfoxide

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Basic Ligand Information

Molecular Structure
Picture of dimethyl sulfoxide (click for magnification)
Molecular Formula
BRENDA Name
InChIKey
C2H6OS
dimethyl sulfoxide
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Synonyms:
(CH3)2SO, dimethylsulfoxid, Dimethylsulfoxide, dimethylsulphoxide, DMSO

Roles as Enzyme Ligand

In Vivo Substrate in Enzyme-catalyzed Reactions (2 results)

EC NUMBER
PROVEN IN VIVO REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
dimethyl sulfoxide + NADH + H+ + O2 = dimethyl sulfone + NAD+ + H2O
show the reaction diagram
-
dimethylsulfoxide + menaquinol = dimethylsulfide + menaquinone + H2O
show the reaction diagram
-

In Vivo Product in Enzyme-catalyzed Reactions (3 results)

EC NUMBER
PROVEN IN VIVO REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
dimethyl sulfide + NADH + H+ + O2 = dimethyl sulfoxide + NAD+ + H2O
show the reaction diagram
-
dimethyl sulfide + ferricytochrome c2 + H2O = dimethyl sulfoxide + ferrocytochrome c2
show the reaction diagram
-
dimethylsulfide + menaquinone + H2O = dimethylsulfoxide + menaquinol
show the reaction diagram
-

Substrate in Enzyme-catalyzed Reactions (17 results)

EC NUMBER
REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
dimethylsulfoxide + oxidized antraquinone-2,6-disulfonate = dimethylsulfide + reduced antraquinone-2,6-disulfonate
show the reaction diagram
-
DMSO + NADPH + H+ + O2 = ?
show the reaction diagram
-
dimethyl sulfoxide + NADH + H+ + O2 = dimethyl sulfone + NAD+ + H2O
show the reaction diagram
-
dimethyl sulfoxide + reduced benzyl viologen = dimethyl sulfide + oxidized benzyl viologen + H2O
show the reaction diagram
-
ATP + H2O + DMSO/in = ADP + phosphate + DMSO/out
show the reaction diagram
-

Product in Enzyme-catalyzed Reactions (11 results)

EC NUMBER
REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
dimethyl sulfide + NADPH + H+ + O2 = dimethyl sulfoxide + NADP+ + H2O
show the reaction diagram
-
dimethyl sulfide + NADH + H+ + O2 = dimethyl sulfoxide + NAD+ + H2O
show the reaction diagram
-
dimethyl sulfone + NADH + H+ = dimethyl sulfoxide + H2O + NAD+
show the reaction diagram
-
dimethylsulfide + thioredoxin disulfide + H2O = dimethylsulfoxide + thioredoxin
show the reaction diagram
-
ATP + H2O + DMSO/in = ADP + phosphate + DMSO/out
show the reaction diagram
-

Activator in Enzyme-catalyzed Reactions (269 results)

EC NUMBER
COMMENTARY
LITERATURE
ENZYME 3D STRUCTURE
up to 15-20% increase IMP dehydrogenase activity
-
DMSO at a final concentration of 30% v/v added into the assay mixture, increases the activity up to 120% of the control enzyme activity
-
the addition of 10% (v/v) dimethyl sulfoxide increases the activity by 161.2%
-
about 145% activity at 5% (v/v)
-
maximum conversion of 5-epiaristolochene to capsidiol activity is observed at final concentrations of 2-5% (v/v) dimethyl sulfoxide
-
reaction rate 111%
-
activity is increased about 2fold in the presence of 5% DMSO (v/v)
-
activates at up to 50% v/v
-
activates
-
103.19% activity at 20% (v/v)
maximal activity at 0.16% (v/v)
stimulates
-
strong stimulation
about 130% activity at 2.5% (v/v) DMSO
-
about 115% activity at 2.5% (v/v) DMSO
-
induction of enzyme expression, erythroleukemia cells
-
increases the enzyme's hydrolytic activity
-
20%, 9fold increase in activity, probably due to crowding effect
-
required
-
1.0%, activation to 160% of the original activity
-
20%, 1.8fold stimulation
-
protects arginine kinase from inactivation losing its native tertiary conformation and aggregation in the presence of guanidine hydrochloride
-
10% v/v, 500% of initial activity, 30% v/v, 110% of initial activity
-
21% increase of activity at 50% (v/v) dimethyl sulfoxide, at 30°C
-
increase in enzyme activity (130%) is observed at 25% v/v DMSO although at a higher concentration (50%), DMSO decreases enzyme activity to 72%
-
21% increase of activity at 50% (v/v) dimethyl sulfoxide, at 30°C
-
activates by 10% at 25% v/v
-
the activity is enhanced by addition of 10% (v/v) dimethylsulfoxide
-
enzyme activity increases to 136% in the presence of 10% (v/v) DMSO
-
about 160% activity at 25%(v/v)
-
cosolvent DMF improves the transglycosylation yields in concentrations of 2%-10% v/v, whereas at higher concentrations (>30% v/v DMSO), it turns out to be deleterious for the process
-
1%, 1.3fold activation
-
catalytic activity is promoted in the presence of DMSO. DMSO affects the oligomerization state, causing the enzyme dimers to associate into tetramers
-
11% activation at 10% w/v
-
activation to 111.5% at 5 mM
-
the activity progressively increases with increase in dimethyl sulfoxide concentration up to 5% (v/v)
-
activity using substrates containing 2% v/v DMSO is 5% higher than that using substrate containing no DSMO
-
activation
-
12% activation at 5%
-
increases enzyme activity up to 2fold with increasing concentration
-
about 140% activity at 2 mM
-
induces conformational changes, stimulates with SecY s substrate, at concentration up to 20% v/v, slightly inhibitory with casein as a substrate
-
increases the catalytic efficiency on the ring cyclization reaction, but not on the ring hydrolysis
-
112% activity at 10% (v/v) DMSO
cosolvent stabilizes tubulin
-
highest activity between 20% and 30% dimethyl sulfoxide (v/v) with a peak at 25%. Records of pH-activity profiles at different dimethyl sulfoxide concentrations and constant ionic strength (100 mM) reveals a strong influence of the cosolvent on the activity of BAL, and indicates a cross effect on the optimal pH with a shift of profiles to the alkaline milieu. Correlation between the dependency on pH and dimethyl sulfoxide concentration is due to interaction of dimethyl sulfoxide with the amino acid side chain Glu50 in the catalytic site of the biocatalyst
-
10% v/v
-
24% activation at 0.5%
-
activates
-
enhances activity
-
water-miscible, enhances phosphotransferase activity
-
activates the whole enzyme activity
-
levels of samp3ylated proteins and samp3 transcripts are increased by the addition of dimethyl sulfoxide to aerobically growing cells
-
activates in absence of the activator acetylglutamate

Inhibitor in Enzyme-catalyzed Reactions (511 results)

EC NUMBER
COMMENTARY
LITERATURE
ENZYME 3D STRUCTURE
32.6% residual activity at 5% (v/v)
-
8.4% residual activity at 40% (v/v)
-
inactivation
-
complete inhibition in buffer without NaCl, 60% inhibition in buffer with 600 mM NaCl
-
complete inhibition by 50% DMSO
-
the native enzyme shows less than 5% residual activity in the presence of DMSO
-
50% inhibition at 20%, 90% inhibition at 30%, pH 5.0, 25°C
-
50% inhibition at 20%, 90% inhibition at 30%, pH 5.0, 25°C
-
less than 10% residual activity at 40% (v/v)
76.0% residual activity at 30% (v/v)
-
competitive inhibition at 16.6-66 mM, binding structure analysis by circular dichroism and fluorescence spectroscopy. Seven DMSO molecules interact with amino acids onthe surface of Renilla luciferase. Two of them interact with two catalytic residues (Glu144, His285), the rest of the DMSO molecules have specific interactions with the residues in the substrate binding site including Pro220, Phe180, and Phe261
inhibits slightly by 10% at 20% v/v
-
about 50% inhibition at 0.5 % (v/v)
-
conversion of 5-epiaristolochene to capsidiol activity is inhibited at concentrations above 10% (v/v) dimethyl sulfoxide
-
1-33% residual activity at 40% (v/v)
-
10% (v/v), 32% inhibition
-
68.04% residual activity at 50% (v/v)
-
slightly inhibitory
-
in the presence of 4% (v/v) DMSO, Mycobacterium tubercolosis reductase activity is reduced by only 10%. It is recommended that the DMSO content in sets of inhibition assays should be kept at a constant with 4% (v/v) DMSO as the upper limit
-
competitive, about 82% inhibition at 1% v/v
-
more than 4% cause inhibition
-
20% inhibition at 40% v/v
-
about 22.9% decreased enzyme activity, 10%
-
98% residual activity at 5 mM
-
20% v/v, 43% inhibition
-
5 mM, 89% loss of activity
-
20% v/v, 62% inhibition
-
80% inhibition at 20% v/v
-
40% inhibition at 20%, 70% inhibition at 30%; slight to moderate inhibition at 20-30%
-
50% inhibition at 10% v/v, no inhibition at 2.86% v/v
-
about 60% residual activity at 30% (v/v)
-
10 mM, 14% loss of activity; 16% inhibition at 10 mM
-
71% residual activity in the presence of 90% (v/v) dimethyl sulfoxide, after 60 min at 70°C
-
BTID-A, 54% inhibition at 1% w/v
-
70% inihibition at 5%
-
49% inhibition at 75% v/v
-
85% inhibition at 10% (vol/vol)
-
increase in enzyme activity (130%) is observed at 25% v/v DMSO although at a higher concentration (50%), DMSO decreases enzyme activity to 72%
-
5% inhibition
-
addition to the reaction mixture results in a dose-dependent inhibition of PAP1 activity, 25% loss of PAP1 activity at a 1% concentration
-
inhibits enzyme activity at concentrations higher than 30% (v/v)
-
4% inhibition at 10% and 13% at 25%
-
inhibits 26% at 15% and 42% at 30%
-
weak inhibition at 5%
-
5 mM, no residual activity
-
80.8% residual activity at 10% (v/v)
-
61%inhibition at 10%
-
the enzyme is inhibited by 30-50% (v/v) DMSO
-
10%, 18.3% loss of activity
-
10% (v/v), about% inhibition
-
reduces the activity by 42% at 6.25% v/v
-
inhibitory effect with more than 5% (v/v) dimethyl sulfoxide
-
10% DMSO decreases the activity to 85%. 30% DMSO reduces the activity to about 70%, and 50% DMSO reduces the activity to about 45%
-
catalytic activity of the protease decreases with increasing DMSO concentration
-
above 5%
-
50% inhibition at 4%
-
competitive
-
the number of active sites of papain decreases with increasing concentration of dimethyl sulfoxide whereas the incubation time, in a buffer containing 3% dimethyl sulfoxide does not affect the number of active sites. A rapid decrease of the initial reaction rate, by up to 30%, is observed between 1 and 2% dimethyl sulfoxide
-
activity gradually decreased above 1.0% DMSO
-
1%, complete loss of activity
about 65% residual activity at 0.1 mM
-
competitive inhibition
-
presence of 2% dimethyl sulfoxide disrupts interactions of enzyme with substrate and thereby reduces activity by 70%
-
98.14% residual activity at 10 mM
-
induces conformational changes, stimulates with SecY as substrate, at concentration up to 20% v/v, slightly inhibitory with casein as a substrate
-
5% v/v, complete inhibition; complete inhibition at 5% (v/v)
-
low concentrations of DMSO, up to a maximum at 10%, enhance synthetic activity, while higher concentrations inhibit
-
inhibition up to 10%, v/v
-
20% v/v, 8% inhibition
-
at 12.5% (v/v) remaining activity, 131.26%, and 25% (v/v) remaining activity, 133.2%
-
nonspecific
-
10%, 26% inhibition
-
about 15% activation at 2%
-

Metals and Ions (1 result)

EC NUMBER
COMMENTARY
LITERATURE
ENZYME 3D STRUCTURE
slight activation
-

3D Structure of Enzyme-Ligand-Complex (PDB) (23136 results)

EC NUMBER
ENZYME 3D STRUCTURE