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Ligand D-arabinose

Basic Ligand Information

Molecular Structure

Show all BRENDA pathways known for D-arabinose

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Roles as Enzyme Ligand

In Vivo Substrate in Enzyme-catalyzed Reactions (12 results)

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Show Natural Substrate (12 entries)

EC NUMBER

PROVEN IN VIVO REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

1.1.1.116

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH

654283, 285769, 668709, 668641

-

1.1.1.117

D-arabinose + NAD(P)+ = D-arabino-1,4-lactone + NAD(P)H

389443, 285790, 285797, 10663, 285791

-

1.1.1.117

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH + H+

739803

-

1.1.1.117

2 entries

1.1.1.122

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH

285801, 285804, 285800, 285798, 285805, 285802, 285806

-

1.1.1.71

D-arabinose + NAD(P)+ = ?

735486

-

1.1.1.B35

D-arabinose + NAD(P)+ = D-arabino-1,4-lactone + NAD(P)H

285774

-

1.1.1.B35

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH + H+

719837

-

1.1.1.B35

2 entries

2.7.1.54

ATP + D-arabinose = ADP + D-arabinose 5-phosphate

636978

-

5.3.1.25

D-Arabinose = ?

2690, 2683, 2693

-

5.3.1.25

D-arabinose = D-ribose

727104

-

5.3.1.3

D-Arabinose = ?

2690, 2683, 2693

-

5.3.1.3

D-Arabinose = D-Ribulose

702836, 702468

-

5.3.1.25

2 entries

5.3.1.3

2 entries

In Vivo Product in Enzyme-catalyzed Reactions (1 result)

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Show Natural Product (1 entry)

EC NUMBER

PROVEN IN VIVO REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

4.1.2.23

3-deoxy-D-manno-octulosonate = pyruvate + D-arabinose

-

-

Substrate in Enzyme-catalyzed Reactions (72 results)

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Show Substrate (72 entries)

EC NUMBER

REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

1.1.1.1

D-arabinose + NADH + H+ = D-arabitol + NAD+

667266

-

1.1.1.107

D-arabinose + NAD+ = ? + NADH

656239

-

1.1.1.107

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH + H+

656239

-

1.1.1.107

2 entries

1.1.1.113

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH

285763

-

1.1.1.115

D-arabinose + NADP+ + H2O = ?

285767

-

1.1.1.116

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH

285767, 285769, 654283, 285768, 285771, 668709, 285772, 10663, 285770, 668641

-

1.1.1.116

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH

10663

-

1.1.1.116

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH + H+

285772

-

1.1.1.117

D-arabinose + NAD(P)+ = D-arabino-1,4-lactone + NAD(P)H

389443, 285790, 285797, 10663, 285791

-

1.1.1.117

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH + H+

285791

-

1.1.1.117

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH + H+

739803

-

1.1.1.116

3 entries

1.1.1.117

3 entries

1.1.1.120

D-arabinose + NADP+ = D-arabinolactone + NADPH

285792

-

1.1.1.122

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH

285801, 285804, 285800, 285798, 285805, 285802, 285806

-

1.1.1.122

D-arabinose + NADP+ = D-arabinolactone + NADPH + H+

741316

-

1.1.1.122

2 entries

1.1.1.124

D-arabinose + NADP+ = ? + NADPH

285814

-

1.1.1.14

D-arabinose + NADH = ?

285886, 285901

-

1.1.1.179

D-arabinose + NADP+ = D-arabinono-1,5-lactone + NADPH + H+

286126

-

1.1.1.19

D-arabinose + NADPH + H+ = D-arabinitol + NADP+

286143

-

1.1.1.2

D-arabinose + NADP+ = D-arabitol + NADPH + H+

726712

-

1.1.1.2

D-arabinose + NADPH = ? + NADP+

286167, 286165

-

1.1.1.21

D-arabinose + NADPH + H+ = arabitol + NADP+

700796, 762387

-

1.1.1.21

D-arabinose + NADPH = arabitol + NADP+

286255

-

1.1.1.2

2 entries

1.1.1.21

2 entries

1.1.1.283

D-arabinose + NADPH = ? + NADP+

670170

-

1.1.1.307

D-arabinose + NADPH + H+ = ?

699505

-

1.1.1.307

D-arabinose + NADPH + H+ = D-arabinitol + NADP+

695731

-

1.1.1.71

D-arabinose + NAD(P)+ = ?

735486

-

1.1.1.71

D-arabinose + NADP+ = ? + NADPH + H+

726712

-

1.1.1.71

D-arabinose + NADP+ = D-arabitol + NADPH + H+

726712

-

1.1.1.B35

D-arabinose + NAD(P)+ = D-arabino-1,4-lactone + NAD(P)H

285774

-

1.1.1.B35

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH

285774

-

1.1.1.B35

D-arabinose + NAD+ = D-arabinono-1,4-lactone + NADH + H+

681445

-

1.1.1.B35

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH

285774

-

1.1.1.B35

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH + H+

285774, 681445, 719837

-

1.1.1.307

2 entries

1.1.1.71

3 entries

1.1.1.B35

5 entries

1.1.2.B5

D-arabinose + 2,6-dichlorophenolindophenol = ? + reduced 2,6-dichlorophenolindophenol

741228

-

1.1.3.10

D-arabinose + O2 = ?

655049

-

1.1.3.37

D-arabinose + NAD+ = erythroascorbic acid + NADH + H+

668641

-

1.1.5.2

D-arabinose + N-methylphenazonium methyl sulfate = D-arabinono-1,5-lactone + ?

741032

-

1.1.99.29

D-arabinose + 1,4-benzoquinone = 2-dehydro-D-arabinose + hydroquinone

644544

-

1.1.99.29

D-arabinose + ferricenium hexafluorophosphate = ?

686685

-

1.1.99.29

2 entries

1.3.1.20

D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH

286128

-

2.4.1.10

sucrose + D-arabinose = ?

488313

-

2.4.1.162

sucrose + D-arabinose = D-glucose + beta-D-fructofuranosyl-(2,1)-D-arabinoside

692116

-

2.4.1.162

sucrose + D-arabinose = D-glucose + beta-D-fructofuranosyl-(2->1)-L-arabinoside

488677

-

2.4.1.20

alpha-D-glucose 1-phosphate + D-arabinose = ?

637855, 637859, 637863

-

2.4.1.20

alpha-D-glucose 1-phosphate + D-arabinose = phosphate + ?

758413

-

2.4.1.7

D-arabinose + alpha-D-glucose 1-phosphate = alpha-D-Glc(1-1)-beta-D-Ara + phosphate

657623

-

2.4.1.7

sucrose + D-arabinose = ?

679550

-

2.4.1.162

2 entries

2.4.1.20

2 entries

2.4.1.7

2 entries

2.5.1.54

phosphoenolpyruvate + D-arabinose = 2-dehydro-3-deoxy-D-gluco-octonate + phosphate

639780

-

2.7.1.15

ATP + D-arabinose = ?

673692

-

2.7.1.15

ATP + D-arabinose = ADP + D-arabinose 5-phosphate

672549, 686025

-

2.7.1.15

2 entries

2.7.1.17

ATP + D(-)-arabinose = ADP + D(-)arabinose 5-phosphate

674223

-

2.7.1.52

ATP + D-arabinose = ?

641670, 641674

-

2.7.1.54

ATP + D-arabinose = ADP + D-arabinose 5-phosphate

636978

-

2.7.1.54

CTP + D-arabinose = CDP + D-arabinose 5-phosphate

636978

-

2.7.1.54

GTP + D-arabinose = GDP + D-arabinose 5-phosphate

636978

-

2.7.1.54

ITP + D-arabinose = IDP + D-arabinose 5-phosphate

636978

-

2.7.1.54

UTP + D-arabinose = UDP + D-arabinose 5-phosphate

636978

-

2.7.1.54

5 entries

3.1.1.73

ferulic acid + D-arabinose = ?

678379

-

3.1.4.4

phosphatidylcholine + D-arabinose = phosphatidylarabinose + choline

135456

-

4.1.2.23

pyruvate + D-arabinose = 3-deoxy-D-manno-octulosonate

4971, 33109, 33110, 33113, 33114

-

4.1.3.3

D-arabinose + pyruvate = 3-deoxy-D-manno-2-octulosonic acid

749150

-

4.1.3.3

D-arabinose + pyruvate = D-3-deoxy-manno-2-octulosonic acid

666750

-

5.3.1.14

D-Arabinose = ?

660751, 714530

-

5.3.1.14

D-arabinose = D-ribulose + D-ribose

661235

-

5.3.1.25

D-Arabinose = ?

2690, 2683, 2693

-

5.3.1.25

D-arabinose = D-ribose

727104

-

5.3.1.25

D-Arabinose = D-Ribulose

2684, 2690, 2693, 2680, 2681, 2682, 2683

-

4.1.3.3

2 entries

5.3.1.14

2 entries

5.3.1.25

3 entries

5.3.1.26

D-arabinose = D-ribulose + D-ribose

674989

-

5.3.1.3

D-Arabinose = ?

2690, 2683, 2693

-

5.3.1.3

D-Arabinose = D-Ribulose

2684, 2690, 2693, 2680, 2681, 2682, 2683, 674955, 690278, 702836, 702468

-

5.3.1.3

2 entries

5.3.1.5

D-Arabinose = ?

2772

-

5.3.1.6

D-Arabinose = ?

749079

-

Product in Enzyme-catalyzed Reactions (9 results)

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Show Product (9 entries)

EC NUMBER

REACTION

REACTION DIAGRAM

LITERATURE

ENZYME 3D STRUCTURE

1.1.1.1

D-arabitol + NADH + H+ = D-lyxose + D-arabinose + NAD+

-

-

3.1.3.23

D-arabinose 5-phosphate + H2O = D-arabinose + phosphate

-

-

3.2.1.21

4-nitrophenyl beta-D-arabinopyranoside + H2O = 4-nitrophenol + D-arabinose

-

-

3.2.1.23

O-beta-D-galactosyl-1,3-D-arabinoside + H2O = beta-D-galactose + D-arabinose

-

-

4.1.2.23

3-deoxy-D-manno-octulosonate = pyruvate + D-arabinose

33112, 33113, 4971, 33109, 33110, 33114,

-

4.1.3.3

D-3-deoxy-manno-2-octulosonic acid = D-arabinose + pyruvate

-

-

5.3.1.14

D-ribose = D-ribulose + D-arabinose

-

-

5.3.1.26

D-ribose = D-ribulose + D-arabinose

-

-

5.3.1.26

D-ribulose = D-ribose + D-arabinose

-

-

5.3.1.26

2 entries

Inhibitor in Enzyme-catalyzed Reactions (15 results)

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Show Inhibitors (15 entries)

EC NUMBER

COMMENTARY

LITERATURE

ENZYME 3D STRUCTURE

1.1.1.116

at high concentrations

285770

-

1.1.1.116

substrate inhibition of Ara2p at concentrations above 5 mM

668641

-

1.1.1.116

2 entries

1.1.1.122

competitive inhibition of L-fucose oxidation at 2.5 mM

285806

-

1.1.3.4

-

389806

-

2.4.1.22

0.4 M, 13% inhibition

488942

-

2.7.1.15

-

671029

-

2.7.1.52

0.5 mM, 20% inhibition. 10 mM, 84% inhibition

641674

-

3.2.1.23

-

171346

-

3.2.1.23

10 mM, 15% inhibition

171288

-

3.2.1.51

95% inhibition at 2.5 mM

208714

-

3.2.1.51

competitive inhibition, Ki: 50 mM

208720

-

3.2.1.23

2 entries

3.2.1.51

2 entries

3.2.1.B26

0.1 M, 64% inhibition of beta-galactoside hydrolysis, 20% inhibition of beta-glucoside hydrolysis

721315

-

3.4.21.10

-

36462

-

5.1.3.3

competitive

2369

-

5.3.1.7

-

2624

-

Enzyme Kinetic Parameters

k_cat Value (Turnover Number) (9 results)

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Show Turnover Number (9 entries)

EC NUMBER

TURNOVER NUMBER [1/S]

TURNOVER NUMBER MAXIMUM [1/S]

COMMENTARY

LITERATURE

1.1.1.107

175

-

pH 8.0, 30°C

656239

1.1.1.179

9

-

-

286126

1.1.1.21

163

-

pH 7.0, 45°C

762387

1.1.1.B35

23.8

-

pH 7.5, 80°C

719837

1.1.2.B5

35.5

-

at pH 8.5 and 30°C

741228

1.1.3.10

7.79

-

pH 7.0, 37°C

655049

5.3.1.14

0.17

-

-

661235

5.3.1.3

0.1823

-

-

702836

5.3.1.5

3

-

-

2772

K_M Value (53 results)

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Show KM Value (53 entries)

EC NUMBER

KM VALUE [MM]

KM VALUE MAXIMUM [MM]

COMMENTARY

LITERATURE

1.1.1.107

0.91

-

pH 8.0, 30°C

656239

1.1.1.115

7.7

-

-

285767

1.1.1.116

0.5

-

-

285772

1.1.1.116

0.67

-

-

285768, 285771

1.1.1.116

0.78

-

pH 8.2, 25°C, recombinant His-tagged Ara2p

668641

1.1.1.116

19

-

-

285769

1.1.1.116

20

-

-

285767

1.1.1.116

29.2

-

-

10663

1.1.1.117

0.82

-

-

285791

1.1.1.117

29.9

-

-

10663

1.1.1.117

53

-

-

389443

1.1.1.117

60

-

-

10663

1.1.1.122

0.4

-

at pH 8.6

285804

1.1.1.122

1.4

-

-

285805

1.1.1.122

2.1

-

-

285806

1.1.1.122

2.8

-

-

285802

1.1.1.122

7.3

-

at pH 10.4

285804

1.1.1.122

14.3

-

-

285800

1.1.1.122

34.4

-

-

285798

1.1.1.122

40

-

-

285801

1.1.1.116

6 entries

1.1.1.117

4 entries

1.1.1.122

8 entries

1.1.1.124

140

-

-

285814

1.1.1.179

130

-

-

286126

1.1.1.19

139.9

-

-

286143

1.1.1.21

110

-

pH 7.0, 45°C

762387

1.1.1.21

446.7

-

-

286255

1.1.1.21

448.4

-

in 50 mM sodium phosphate at pH 7.0 and 30°C

700796

1.1.1.21

3 entries

1.1.1.307

285.4

-

pH 6.0

695731

1.1.1.B35

1.4

-

pH 7.5, 70°C, determined with 0.4 mM NADP+

681445

1.1.1.B35

161

-

-

285774

1.1.1.B35

2 entries

1.1.2.B5

30.3

-

at pH 8.5 and 30°C

741228

1.1.3.10

174

-

pH 7.0, 37°C

655049

1.1.3.37

0.78

-

-

668641

1.1.99.29

17

-

at 30°C with 0.4 mM ferricenium as electron acceptor

686685

2.4.1.20

240

-

-

637855

2.7.1.54

1.2

-

pH 8.0, 37°C

636978

5.3.1.14

127

-

-

661235

5.3.1.14

127.4

-

50°C, pH 9.0, recombinant enzyme

660751

5.3.1.25

98

-

constitutive mutant 531

2682

5.3.1.25

140

-

wild type strain PRL-R3

2682

5.3.1.25

160

-

constitutive mutant 502

2682

5.3.1.25

160

-

D-arabinose

2685, 2686

5.3.1.25

170

-

E. coli B/r

2684

5.3.1.25

220

-

-

2680

5.3.1.25

280

-

E. coli K-12

2684

5.3.1.3

98

-

constitutive mutant 531

2682

5.3.1.3

140

-

wild type strain PRL-R3

2682

5.3.1.3

152

-

-

702836

5.3.1.3

160

-

constitutive mutant 502

2682

5.3.1.3

160

-

D-arabinose

2685, 2686

5.3.1.3

170

-

E. coli B/r

2684

5.3.1.3

220

-

-

2680

5.3.1.3

280

-

E. coli K-12

2684

5.3.1.14

2 entries

5.3.1.25

7 entries

5.3.1.3

8 entries

5.3.1.5

151

-

-

2772

References & Links

Literature References (109)

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Show Reference (109 entries)

BRENDA REFERENCE ID

PUBMED ID

TITLE

YEAR

AUTHORS

JOURNAL

VOLUME

PAGES

2369

1092963

Mutarotase (aldose 1-epimerase) from kidney cortex

1975

Bailey, J.M.; Fishman, P.H.; Kusiak, J.W.; Mulhern, S.; Pentchev, P.G.

Methods Enzymol.

41

471-484

2624

-

Aldose-ketose isomerases

1972

Noltmann, E.A.

The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )

6

271-354

2680

-

D-Arabinose isomerase

1966

Mortlock, R.P.

Methods Enzymol.

9

583-585

2681

5796753

Competitive inhibition of an L-fucose isomerase activity by dithiothreitol

1969

Oliver, E.J.; Mortlock, R.P.

Biochem. Biophys. Res. Commun.

36

24-29

2682

5122810

Metabolism of D-arabinose by Aerobaceter aerogenes: Purification of the isomerase

1971

Oliver, E.J.; Mortlock, R.P.

J. Bacteriol.

108

293-299

2683

5122807

Growth of Aerobacter aerogenes on D-arabinose: origin of the enzyme activities

1971

Oliver, E.J.; Mortlock, R.P.

J. Bacteriol.

108

287-292

2684

4632320

Properties of D-arabinose isomerase purified from two strains of Escherichia coli

1973

Boulter, J.R.; Gielow, W.O.

J. Bacteriol.

113

687-696

2685

-

Purification and crystallization of D-arabinose (L-fucose) isomerase from Aerobacter aerogenes by polyethylene glycol

1974

Izumori, K.; Yamanaka, K.

Agric. Biol. Chem.

38

267-273

2686

236476

D-Arabinose (L-fucose) isomerase from Aerobacter aerogenes

1975

Yamanaka, K.; Izumori, K.

Methods Enzymol.

41B

462-465

2690

3005235

Isolation of a mutation resulting in constitutive synthesis of L-fucose catabolic enzymes

1986

Bartkus, J.M.; Mortlock, R.P.

J. Bacteriol.

165

710-714

2693

4928018

Metabolism of D-arabinose: a new pathway in Escherichia coli

1971

LeBlanc D.J.; Mortlock, R.P.

J. Bacteriol.

106

90-96

2772

2390219

Comparative kinetics of D-xylose and D-glucose isomerase activities of the D-xylose isomerase from Thermus aquaticus HB8

1990

Lehmacher, A.; Bisswanger, H.

Biol. Chem. Hoppe-Seyler

371

527-536

4971

-

2-Keto-3-deoxy-6-phosphogluconic and related aldolases

1972

Wood, W.A.

The Enzymes, 3rd Ed. (Boyer, P. D. , ed. )

7

281-302

10663

8841374

D-Arabinose dehydrogenase and biosynthesis of erythroascorbic acid in Candida albicans

1996

Kim, S.T.; Huh, W.K.; Kim, J.Y.; Hwang, S.W.; Kang, S.O.

Biochim. Biophys. Acta

1297

1-8

33109

-

3-Deoxyoctulosonic acid aldolase

1966

Ghalambor, M.A.; Heath, E.C.

Methods Enzymol.

9

534-538

33110

5912115

The biosynthesis of cell wall lipopolysaccharide in Escherichia coli. V. Purification and properties of 3-deoxy-D-manno-octulosonate aldolase

1966

Ghalambor, M.A.; Heath, E.C.

J. Biol. Chem.

241

3222-3227

33112

-

KDO aldolase

1999

Wong, C.H.; Sugai, T.; Shen, G.J.

U. S. 23pp. Cont. -in part of U. S. 5,585,261

-

-

33113

-

Localization of the enzyme 3-deoxy-D-manno-2-octulosonic acid aldolase

1990

Knappmann, B.R.; Kula, M.R.

Appl. Microbiol. Biotechnol.

33

324-329

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