Any feedback?
Please rate this page
(ligand.php)
(0/150)

BRENDA support

Ligand 2-deoxy-D-ribofuranose

Please wait a moment until all data is loaded. This message will disappear when all data is loaded.

Basic Ligand Information

Molecular Structure
Picture of 2-deoxy-D-ribofuranose (click for magnification)
Molecular Formula
BRENDA Name
InChIKey
C5H10O4
2-deoxy-D-ribofuranose
PDWIQYODPROSQH-PYHARJCCSA-N
Synonyms:
2-deoxy-D-erythro-pentofuranose, 2-deoxy-D-ribose, 2-Deoxyribose, D-2-deoxyribose, D-deoxyribose, deoxyribose
Pathway Source
Pathways

Roles as Enzyme Ligand

In Vivo Substrate in Enzyme-catalyzed Reactions (3 results)

EC NUMBER
PROVEN IN VIVO REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
2-deoxy-D-ribose + NAD+ = ? + NADH
show the reaction diagram
-
ATP + 2-deoxy-D-ribose = ADP + 2-deoxy-D-ribose 5-phosphate
show the reaction diagram
-
ATP + 2-deoxy-D-ribose = ADP + 2-deoxy-D-ribose 5-phosphate
show the reaction diagram
-

In Vivo Product in Enzyme-catalyzed Reactions (1 result)

EC NUMBER
PROVEN IN VIVO REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
2'-deoxyadenosine + H2O = 6-aminopurine + 2-deoxy-D-ribofuranose
show the reaction diagram
-

Substrate in Enzyme-catalyzed Reactions (16 results)

EC NUMBER
REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
2-deoxy-D-ribose + NAD+ = ? + NADH
show the reaction diagram
-
2-deoxy-D-ribose + NAD+ = 2-deoxy-D-ribono-1,4-lactone + NADH
show the reaction diagram
-
2-deoxy-D-ribose + NADP+ = ? + NADPH
show the reaction diagram
-
2-deoxy-D-ribose + NAD+ = ? + NADH
show the reaction diagram
-
2-deoxyribose + NADPH = ?
show the reaction diagram
-
2-deoxy-D-ribose + NADH + H+ = ?
show the reaction diagram
-
2-deoxy-D-ribose + NADPH + H+ = ?
show the reaction diagram
-
ATP + 2-deoxy-D-ribose = ADP + 2-deoxy-D-ribose 5-phosphate
show the reaction diagram
-
pyruvate + 2-deoxy-D-ribose = 3,5-dideoxy-alpha-D-manno-2-octulosonic acid
show the reaction diagram
-

Product in Enzyme-catalyzed Reactions (14 results)

EC NUMBER
REACTION
REACTION DIAGRAM
LITERATURE
ENZYME 3D STRUCTURE
2-Deoxyribose 5-phosphate + H2O = 2-Deoxyribose + phosphate
show the reaction diagram
-
deoxycytidine + H2O = D-deoxyribose + cytosine
show the reaction diagram
-

Activator in Enzyme-catalyzed Reactions (1 result)

EC NUMBER
COMMENTARY
LITERATURE
ENZYME 3D STRUCTURE
activates
-

Inhibitor in Enzyme-catalyzed Reactions (3 results)

EC NUMBER
COMMENTARY
LITERATURE
ENZYME 3D STRUCTURE
competitive
-

Enzyme Kinetic Parameters

kcat Value (Turnover Number) (8 results)

EC NUMBER
TURNOVER NUMBER [1/S]
TURNOVER NUMBER MAXIMUM [1/S]
COMMENTARY
LITERATURE
2.83
-
-
1.4
-
pH 7.0, 25°C, NADPH-dependent monospecific xylose reductase, cofactor: NADPH

KM Value (17 results)

EC NUMBER
KM VALUE [MM]
KM VALUE MAXIMUM [MM]
COMMENTARY
LITERATURE
310
-
0.1 M glycine-NaOH buffer, pH 10.0, 25°C
24
-
-
17.5
-
-
0.038
-
pH 7.0, 25°C, NADPH-dependent monospecific xylose reductase, cofactor: NADPH

References & Links

Links to other databases for 2-deoxy-D-ribofuranose

ChEBI
PubChem
ChEBI
PubChem